SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100368

Length: 834 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene100368

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase-like protein [Arabidopsis thaliana] gb\|AAF86534.1\|AC002560_27 F21B7.14 [Arabidopsis thaliana] gb\|AAK92772.1\| putative glycosylation enzyme [Arabidopsis thaliana] gb\|AAM20384.1\| putative glycosyla	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Acetylglucosaminyltransferase, putative	-	-	3.005e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein xylosyltransferase.	EC:2.4.2.26	-	1.822e-29	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	1.822e-29	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	1.822e-29	%
Sma3	Metabolic pathways	01100	1.822e-29	%

Source	Gene names
Sma3	109N23.3; AT4g03340; AT4g27480; At1g03520; At1g53100; At1g71070; At2g37580; At2g37585; At3g03690; At3g15350; At3g24040; At4g03340; At5g15050; At5g39990; B1015E06.23; BGGP; F23N20.6; F27G19.80; F2G14_170; F4C21.27; F8L10.4; GSVIVT00003832001; GSVIVT0001688

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	acetylglucosaminyltransferase activity	GO:0008375	Molecular Function	-
Sma3	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	-
Sma3	isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine	GO:0018153	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Glycosyl transferase, family 14	IPR003406	-	-
Sma3	Protein of unknown function DUF674	IPR007750	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G03520.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein chr1:877948-879553 REVERSE LENGTH=447	67%
RefSeq	Arabidopsis thaliana	NP_001077453.1	core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase-like protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002319376.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P276

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 277 - 424

Fln protein: LHGIFNCFIMAMIHFGYCSRESNSADVFHLKGTDDFSGHYVESDIVELPHRGLPKPPRIAYLISGTKGDSQRMIRTLQALYHPRNHYLLHLDLEAPPRERLELAKSVKMEPIFVEAKNVHVVGKANLVTYKGPTMIACTLHAVAILLKQSKEWDWFINLSASDYPLVTQDDLLHVFSYLPKDLNFIEHTSDIGWKEYQRAKPIIIDPGLYHSRKSDIFWATQHRAVPTAFKLYAGSAWVVLTRTFLEFCIWGWDNLPRTVLMYYTNFISSWELQITV

Protein Length: 278

Fln nts: AGCTCCATGGTATCTTTAATTGTTTTATCATGGCAATGATCCACTTTGGATATTGTTCCCGGGAGTCTAATTCTGCTGATGTATTTCATCTTAAGGGAACTGATGATTTTAGTGGTCATTATGTGGAATCTGATATAGTTGAACTTCCTCATCGTGGCCTACCGAAGCCTCCAAGAATAGCATATCTTATTTCTGGAACCAAAGGAGATAGCCAGAGGATGATAAGGACTTTACAGGCTCTTTATCATCCAAGAAATCATTATTTATTGCATTTAGATCTGGAAGCACCTCCAAGGGAAAGGCTTGAATTAGCAAAATCTGTGAAGATGGAGCCAATCTTCGTGGAAGCAAAGAATGTCCATGTCGTCGGTAAGGCCAATCTGGTTACATATAAGGGTCCAACTATGATCGCTTGTACACTTCATGCCGTGGCCATTCTGCTAAAGCAAAGTAAAGAATGGGATTGGTTTATCAACCTCAGTGCATCTGATTATCCACTGGTTACACAAGATGATTTACTCCATGTTTTCTCTTACTTGCCAAAGGACCTAAATTTCATTGAGCATACGAGTGATATTGGATGGAAAGAGTATCAAAGAGCTAAACCAATTATTATTGACCCAGGATTGTACCATTCAAGAAAGTCTGACATATTTTGGGCCACTCAGCATCGAGCTGTTCCAACTGCGTTCAAATTATATGCAGGTTCAGCGTGGGTGGTTTTAACTCGTACATTTTTGGAGTTTTGTATATGGGGTTGGGACAATCTTCCACGAACAGTTTTAATGTACTACACAAACTTTATCTCATCCTGGGAATTGCAAATAACAGTGT

Fln Alignment:

AllPine_a_c25574___MAMIHFGYCSRESNSADVFHLKGTDDFSGHYVESDIVELPHRGLPKPPRIAYLISGTKGDSQRMIRTLQALYHPRNHYLLHLDLEAPPRERLELAKSVKMEPIFVEAKNVHVVGKANLVTYKGPTMIACTLHAVAILLKQSKEWDWFINLSASDYPLVTQDDLLHVFSYLPKDLNFIEHTSDIGWKEYQRAKPIIIDPGLYHSRKSDIFWATQHRAVPTAFKLYAGSAWVVLTRTFLEFCIWGWDNLPRTVLMYYTNFISSWE
A9P276________________IATIRLGSSTQGVNSS----LKQIDDSGGYFVEANLGEDAHSGEAKLPRLAYLISGTKGDSHRMKRTLQALYHPLNHYLLHLDLEAPPRERLEVAMYVKSDPTFSKINNVHVVGKANLVTYKGPTMVACTLQAVAILLRQSKDWDWFINLSASDYPLVTQDDLLRVFSALPRGLNFIEHTSDIGWKEYQRAKPIIIDPGLYLPKKSDIFWVTQHRAVPTSFKLFTGSAWVMLTRTFLEFCIWGWDNLPRTVLMYYTNFVSSPE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
493	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain