SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100316

Length: 544 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene100316
AGCAACTCAAATAGCTTATTCCGTCACTGTGGCAAGCATGATTTCCGCGCTCTTTACTAAAAGACGGAAACGAGATCCGATCAAAAGTCGGAACTTATTGCATTCTTTTTATAGCCCTCGCAGTGCATGTATTTGCAGTGAATTTGGTTCAACACTATAACTTCTCAGTGGTGGGCGAGTATCTAGCAAAAAGGATCCGCCAAAGAATGTTTTCAAAAATCCTGACATTCGAAGTTGGCTGGTTCGATGAGGACCAAAATTCCAGTGGAGCTATTTGTTCAAAGTTGGCCAAGGAAGCTAATGTGGTAAGATCCTTGGTAGGAGATCGTGTTTCGCTTCTAGTGGAGTGTCTCTCTGGAGTAATTATAACAGTGACACTGGGAATGTTTGTAGCATGGCGATTTGCTATTGTGTTGATTGCTGTGCAGCCGTTGATGGTTCTTTGTTTCTATACTCGAAGCGTCCTCCTTAAAAGCGTTTCGGGTAAATCTATTAAGGCGCAGAATCAAGGCAGCCAAGCGGCCTTCGAATGTGTCACACATCA

Ace file of the UniGene sp_v3.0_unigene100316 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[V] COG1132 ABC-type multidrug transport system, ATPase and permease components	-	-	2.0e-11	24%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	20%
Sma3	Multidrug/pheromone exporter, MDR family, ABC transporter family	-	-	2.954e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	1.724e-09	-

Source	Gene names
Sma3	At3g28344; At3g28345; At3g28360; At3g28380; At3g28390; At3g28415; At3g30875; G1262; GSVIVT00016667001; GSVIVT00020844001; GSVIVT00020845001; GSVIVT00020849001; GSVIVT00030719001; GSVIVT00035701001; H0510A06.10; H0525D09.2; LOC_Os02g09720; MDR13; MDR18; MD

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting ATP synthase complex, catalytic core F(1)	GO:0045261	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	-
Sma3	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ATPase, F1 complex, delta/epsilon subunit	IPR001469	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G28345.1	ABC transporter family protein chr3:10593921-10598775 REVERSE LENGTH=1240	59%
RefSeq	Arabidopsis thaliana	NP_189475.1	ABC transporter B family member 15 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002323866.1	multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1059 aas, your sequence is shorter than subject: 180 - 1316

Fln protein: QLK*LIPSLWQA*FPRSLLKDGNEIRSKVGTYCILFIALAVHVFAVNLVQHYNFSVVGEYLAKRIRQRMFSKILTFEVGWFDEDQNSSGAICSKLAKEANVVRSLVGDRVSLLVECLSGVIITVTLGMFVAWRFAIVLIAVQPLMVLCFYTRSVLLKSVSGKSIKAQNQGSQAAFECVTH

Protein Length: 181

Fln nts: AGCAACTCAAATAGCTTATTCCGTCACTGTGGCAAGCATGATTTCCGCGCTCTTTACTAAAAGACGGAAACGAGATCCGATCAAAAGTCGGAACTTATTGCATTCTTTTTATAGCCCTCGCAGTGCATGTATTTGCAGTGAATTTGGTTCAACACTATAACTTCTCAGTGGTGGGCGAGTATCTAGCAAAAAGGATCCGCCAAAGAATGTTTTCAAAAATCCTGACATTCGAAGTTGGCTGGTTCGATGAGGACCAAAATTCCAGTGGAGCTATTTGTTCAAAGTTGGCCAAGGAAGCTAATGTGGTAAGATCCTTGGTAGGAGATCGTGTTTCGCTTCTAGTGGAGTGTCTCTCTGGAGTAATTATAACAGTGACACTGGGAATGTTTGTAGCATGGCGATTTGCTATTGTGTTGATTGCTGTGCAGCCGTTGATGGTTCTTTGTTTCTATACTCGAAGCGTCCTCCTTAAAAGCGTTTCGGGTAAATCTATTAAGGCGCAGAATCAAGGCAGCCAAGCGGCCTTCGAATGTGTCACACATCA

Fln Alignment:

AllPine_a_c25395___DGNEIRSKVGTYCILFIALAVHVFAVNLVQHYNFSVVGEYLAKRIRQRMFSKILTFEVGWFDEDQNSSGAICSKLAKEANVVRSLVGDRVSLLVECLSGVIITVTLGMFVAWRFAIVLIAVQPLMVLCFYTRSVLLKSVSGKSIKAQNQGS
E6Y0T0________________DGKKVMNEVSKLALEFVYLACGAGVASLLQVSCWMCTGERQATRIRSLYLKTILRQDIGFFDSEA-STGEVIGRMSGDTILIQDAMGEKVGKFIQFITTFIAGFVIAFIKGWKLSLVMLSMIPLLVVSGGSMAMIISKMSSRGQQAYSEAA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
171	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain