SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100264

Length: 1171 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene100264

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor 1 [Arabidopsis thaliana] ref\|NP_851169.1\| splicing factor 1 [Arabidopsis thaliana] ref\|NP_001032055.1\| splicing factor 1 [Arabidopsis thaliana] dbj\|BAA97393.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN13087.1\| unknown protein [	-	-	5.0e-24	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Os04g0385700 protein	-	-	9.26e-06	-

Source	Gene names
Sma3	OSJNBa0044M19.2; Os04g0385700;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303489.1	predicted protein [Populus trichocarpa]	1.0e-26	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH8

Fln msg: your sequence is shorter than subject: 334 - 970

Fln protein: NGSAGIAPDISKGHEFGTSSVQGSRLHGYSPNFSHVGLESSFDSLSFSHMGLGPRFEHNYGKEIDHSNVYVGYLPPTMEEEQLIKLFSPFGRIVEAKVIRDDVKGSSKGYGFLKFYNIQCAAQAIAHMNGYRLEDKTLAVRVAGWPPGSGMGPAEDLYTSDKQQPPRLPVHSGDYAQISWNPSTRPVSSSPYNLYSNNNGSGMPYHSGNPLQGGTFNSLPATSYRTYDLRSAESSSGMHGPPRSQPVLDNVHVFSMSKLNVHSADAMSHFSPNQSRISTFQHYAPPSLPSGSAYSESPSQASLMIGLGTTPWPSSLFPSGYEKKAVGLEYERF*

Protein Length: 335

Fln nts: AATGGAAGTGCTGGAATAGCACCTGATATAAGCAAGGGTCATGAATTTGGGACCTCTTCTGTACAAGGTTCTCGTTTGCATGGATACAGCCCCAACTTTTCACATGTGGGTTTGGAATCTAGTTTTGACAGTCTTTCCTTTTCCCATATGGGTTTGGGACCTCGTTTTGAACATAATTATGGTAAAGAAATTGATCACTCAAATGTATATGTGGGATATCTGCCTCCTACCATGGAAGAGGAACAATTGATTAAGCTATTCTCTCCTTTTGGTAGAATAGTTGAAGCCAAAGTTATTAGGGACGATGTGAAAGGTTCAAGCAAAGGTTATGGTTTTTTAAAATTTTATAACATCCAATGTGCTGCCCAAGCTATTGCACATATGAATGGCTACAGGTTGGAAGACAAGACTTTAGCTGTAAGGGTAGCAGGATGGCCTCCTGGCTCTGGGATGGGACCTGCAGAAGATCTTTACACTTCTGATAAGCAACAACCACCGAGATTGCCTGTCCATTCTGGTGATTATGCACAGATATCATGGAATCCTTCAACTAGGCCTGTGTCATCATCTCCTTATAATCTTTATTCTAATAACAATGGTTCTGGCATGCCATACCATAGTGGCAATCCTTTGCAAGGAGGAACTTTCAACAGTCTGCCAGCTACTTCATATCGTACATATGATCTCCGTTCGGCAGAATCATCTAGTGGCATGCACGGGCCGCCTAGATCTCAACCAGTGCTAGACAATGTCCATGTTTTCTCGATGTCAAAATTAAATGTCCATTCAGCAGATGCCATGAGCCATTTTTCTCCAAACCAATCCAGGATTTCTACATTTCAGCACTATGCACCTCCATCTCTTCCATCAGGCAGTGCATATTCCGAGTCACCATCACAAGCTTCATTAATGATAGGTTTGGGTACTACTCCATGGCCTTCTAGCCTTTTTCCTTCTGGATATGAGAAGAAAGCTGTGGGATTGGAATACGAAAGATTTTGA___TCTGAAATGGGGCTGTGACATGAGAACATTTCAGGGATAGATAATATTTCTTTCTGAGACTTAAAGTTGAGTGTGTATATCAAACAGAAGTAATTAATCTCTGATTGACTGTGTACAAGGTAAATTGCCTTCTCTGTTTTTGTGAGCAAAAAATATTGATAAGCAAGCT

Fln Alignment:

AllPine_a_c25201___NGSAGIAPDISKGHEFGTSSVQGSRLHGYSPNFSHVGLESSFDSLSFSHMGLGPRFEHNYGKEIDHSNVYVGYLPPTMEEEQLIKLFSPFGRIVEAKVIRDDVKGSSKGYGFLKFYNIQCAAQAIAHMNGYRLEDKTLAVRVAGWPP-GSGMGPAEDLYTSDKQQPPRLPVHSGDYAQISWNPSTRPVXXXXXXXXXXXXXXXMPYHSGNPLQGGTFNSLPATSYRTYDL-RSAESSSGMHGPPRSQPVLDNVHVFSMSKLNVHSADAMSHFSPNQSRISTFQHYAPPSLPSGSAYSESPSQASLMIGLGTTPWPSSLFPSGYEKKAVGLEYERF*SEMGL
B8LRH8________________NGSAGIGPDIRKGGGFGTSSVQGSRPYGYSPYSSHVGLESSFDSPSFSHKGLGSHFEHNHGKEIDHSTVYVGYLPPTMEEEQLIKLFSSFGRIVEAKVIRDDVKGSGKGYGFVKFNNIHCTAQAIVHMNGYRLEGKTLAVMASGWPPSGSGVGPAEALYTFDKQQSPRLPVHSGDYAQPSWSAPTRPVSSFPYNYYSDNNGSGMPSHSVSPLQGGTFKSLPATSYCTYDLYQMPLPSSGMQGPLRSQKVLDNVHDSLISKLNVHSADAMSQFSPNQTRISTYQHYAPPSIPSGGAYSGSPSRGSLMGGLGTPPLSSSLFSSGYEKKAMELEYERFLSESGL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
191	33			66	0.997452
303		33		66	0.999999
678	75		25		0.996473
681	75		25		0.996473
685		25		75	0.996473
688		75		25	0.996473
689		75	25		0.996473
697		25	75		0.996473
698			75	25	0.996473
712		25		75	0.996473
789	80		20		0.995493
791		20		80	0.995493
792		80	20		0.995493
793	80			20	0.995493
797	80	20			0.995493
798			80	20	0.995493
799	80			20	0.995493
800			20	80	0.995493
803		80		20	0.995493
804	80		20		0.995493
806		20	80		0.995493
808		20	80		0.995493
809		80		20	0.995493
988	50		50		1.0
998	50	50			1.0
999	33		66		0.997452
1009			66	33	0.997452
1011		33		66	0.997452
1024		33		66	0.997452
1050			66	33	0.997452
1053	75		25		0.996473
1054	75		25		0.996473
1055			25	75	0.996473
1061	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain