SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100112

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene100112
AATAATGTGTAGGAACTTCTTTAATTTCATATCTGACTTGTAGTATTCCAGTGATTTATGATAGCAAAAGAACAGTATTATCTTTGCCTCCCATTATCAATGGTGCACATTCTGCAATCACTTTGAAAACAAAGAATGTCTTCATTGAATGCACAGGAACGGACCTGACTAAAGCAAAAAATTGTACTGAACACAATGGTGACAATGTTCTCTATGTACTGTG

Ace file of the UniGene sp_v3.0_unigene100112

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana] sp\|Q9SGE9.1\|SYFB_ARATH RecName: Full=Probable phenylalanyl-tRNA synthetase beta chain; AltName: Full=Phenylalanine--tRNA ligase beta chain; Short=PheRS gb\|AAG51865.1\|AC010926_28 putative pheny	-	-	1.0e-18	93%
FL-Next	sp=Probable phenylalanine--tRNA ligase beta subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	93%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:6.1.1.2-	-	2.412e-10	-

Source	Gene names
Sma3	At1g72550; CHLREDRAFT_193500; F28P22.26; GSVIVT00017573001; MICPUCDRAFT_45062; MICPUN_57307; OSJNBa0001A14.7; OSTLU_28254; Os05g0558900; OsI_20948; OsJ_19516; Ot18g00560; PHATRDRAFT_27709; PHYPADRAFT_117470; PHYPADRAFT_234760; POPTRDRAFT_730088; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	phenylalanine-tRNA ligase activity	GO:0004826	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	phenylalanyl-tRNA aminoacylation	GO:0006432	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic	IPR004531	-	-
Sma3	B3/B4 tRNA-binding domain	IPR005146	-	-
Sma3	tRNA synthetase, B5-domain	IPR005147	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72550.1	tRNA synthetase beta subunit family protein chr1:27319947-27323908 REVERSE LENGTH=598	6.0e-21	93%
RefSeq	Arabidopsis thaliana	NP_849879.1	phenylalanyl-tRNA synthetase beta chain [Arabidopsis thaliana]	8.0e-21	93%
RefSeq	Populus trichocarpa	XP_002330528.1	predicted protein [Populus trichocarpa]	8.0e-21	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SGE9

Fln msg: Overlapping hits, possible frame ERROR between 179 and 172, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 319 aas, your sequence is shorter than subject: 74 - 598

Fln protein: *CVGTSLISYLTCSIPVIYDSKRTVLSLPPIINGAHSAITLKTKNVFIECTGTDLTxxxxIVLNTMVTMFSMYC

Protein Length: 75

Fln nts: AATAATGTGTAGGAACTTCTTTAATTTCATATCTGACTTGTAGTATTCCAGTGATTTATGATAGCAAAAGAACAGTATTATCTTTGCCTCCCATTATCAATGGTGCACATTCTGCAATCACTTTGAAAACAAAGAATGTCTTCATTGAATGCACAGGAACGGACCTGACTxxxxxxxxxxxxATTGTACTGAACACAATGGTGACAATGTTCTCTATGTACTGTG

Fln Alignment:

AllPine_a_c24752___PVIYDSKRTVLSLPPIINGAHSAITLKTKNVFIECTGTDLTxxxIVLNTMVTMFSMYC
Q9SGE9________________PVLYDSKRTVLSLPPIINGAHSAITLQTKNVFIECTATDLTxxxIVLNTMVTTFSEFC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2	66			33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain