SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99940

Length: 947 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene99940 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	arabinose kinase [Arabidopsis thaliana] sp\|O23461.1\|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 emb\|CAB10392.1\| galactokinase like protein [Arabidopsis thaliana] emb\|CAB78655.1\| galactokinase like protein [Arabidopsis thaliana] gb\|AEE83696.1\| a	-	-	0.0	79%
FL-Next	sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	85%

Source	Gene names
Sma3	AT4G16130; AT4g16130; At3g42850; At4g16130; F18P9_10; GSVIVT00017022001; GSVIVT00032365001; ISA1; OJ1123_E07.2; Op_42850; Os02g0141300; Os06g0702500; OsI_05805; OsI_24367; OsJ_05332; OsJ_22544; P0596H10.38-1; PHYPADRAFT_109068; PHYPADRAFT_176198; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	L-arabinokinase activity	GO:0009702	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	phosphorylation	GO:0016310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	GHMP kinase, ATP-binding, conserved site	IPR006203	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3		IPR012366	-	-
Sma3	Galactokinase, glycosyltransferase	IPR012369	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16130.1	ARA1, ISA1, ATISA1 arabinose kinase chr4:9120875-9127656 FORWARD LENGTH=1039	79%
RefSeq	Arabidopsis thaliana	NP_193348.1	arabinose kinase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002331441.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23461

Fln msg: Overlapping hits, possible frame ERROR between 179 and 179, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 677 aas, your sequence is shorter than subject: 315 - 1039

Fln protein: S*PWLSLKDRDSAASLRLKFAYYVTGHGFGHATRVVEVARHLVAAGHEVHVVTGAPDFxxTSEISSS*PWLSLKVLLDCGAVQADALTVDRLASLEKYSQTAVVPRASILATEVEWLKSIKADLVISDVVPVACRAAADAGIPSVCVTNFSWDFIYAEYVMEAGYHHRSTVWQIAEDYSHCLFLLRLPGYCPMPAFRDVIDVPLVVRKARRSREEVRKELGVSDDTKLVIFNFGGQQASWTLKEESLPPGWICLVCAASPKQVFPPNFKRLAADVYTPDLIAACDCMLGKIGYGTVSEALAYKIPFVFVRRDYFN

Protein Length: 316

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGATCGGGACTCTGCAGCGTCTCTGCGCCTGAAATTCGCTTATTATGTAACAGGCCATGGATTCGGCCACGCCACCCGAGTCGTGGAGGTGGCACGACATCTTGTTGCAGCAGGACATGAAGTTCATGTGGTTACTGGGGCTCCAGACTTTxxxxxxACTAGTGAAATAAGTTCGTCGTGACCTTGGCTGTCACTCAAGGTTTTGCTTGATTGTGGAGCTGTACAAGCAGATGCTTTGACTGTTGATCGACTTGCATCCTTAGAGAAGTATTCCCAGACAGCAGTTGTACCACGTGCCTCAATATTGGCTACTGAAGTAGAATGGCTGAAATCAATCAAGGCAGATTTGGTGATCTCAGATGTTGTACCTGTGGCATGTCGAGCGGCAGCAGATGCTGGTATCCCATCTGTCTGTGTGACCAATTTCAGTTGGGATTTTATATATGCAGAATATGTTATGGAAGCTGGTTATCATCACCGTTCCACAGTTTGGCAGATAGCTGAAGACTATTCTCATTGCCTTTTCTTGCTCAGACTTCCTGGCTATTGTCCTATGCCAGCTTTTCGTGATGTTATTGATGTGCCCCTCGTTGTTAGGAAAGCACGAAGAAGTCGTGAAGAGGTGCGTAAAGAACTTGGGGTTAGTGATGATACCAAGTTAGTTATCTTCAATTTTGGTGGTCAGCAAGCTAGCTGGACCTTGAAGGAAGAATCATTACCACCTGGTTGGATATGCTTGGTATGTGCTGCATCTCCAAAGCAAGTGTTTCCACCCAACTTTAAAAGGCTTGCAGCAGATGTCTACACACCTGATCTGATTGCAGCATGCGACTGCATGCTAGGCAAAATTGGATATGGTACTGTGAGTGAGGCCTTGGCATACAAGATACCTTTTGTCTTCGTTCGCCGTGATTATTTCAATG

Fln Alignment:

AllPine_a_c24124___SAASLRLKFAYYVTGHGFGHATRVVEVARHLVAAGHEVHVVTGAPDFVFTSEISSS*PWLSL-KVLLDCGAVQADALTVDRLASLEKYSQTAVVPRASILATEVEWLKSIKADLVISDVVPVACRAAADAGIPSVCVTNFSWDFIYAEYVMEAGYHHRSTVWQIAEDYSHCLFLLRLPGYCPMPAFRDVIDVPLVVRKARRSREEVRKELGVSDDTKLVIFNFGGQQASWTLKEESLPPGWICLVCAASPKQVFPPNFKRLAADVYTPDLIAACDCMLGKIGYGTVSEALAYKIPFVFVRRDYFN
O23461_______________SASSKHLVFAYYVTGHGFGHATRVVEVVRHLIAAGHDVHVVTGAPDFVFTSEIQS--PRLKIRKVLLDCGAVQADALTVDRLASLEKYVETAVVPRAEILETEVEWLHSIKADFVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGYHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIAEDVNVVILNFGGQPSGWNLKETSLPTGWLCLVCGASETLELPPNFIKLAKDAYTPDIIAASDCMLGKIGYGTVSEALSYKVPFVFVRRDYFN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
274	16	83			0.994512
278		83		16	0.994512
301	12	87			0.992554
303		87		12	0.992554
304		87	12		0.992554
367		14		85	0.993533
734	66	33			0.997464
737	33		66		0.997476
749		66		33	0.997476
754	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain