SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99929

Length: 933 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene99929

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-MYB transcription factor MYB9 n=2 Tax=Picea RepID=A5JYF3_PICGL	-	-	1.0e-14	32%
FL-Next	tr=R2R3-MYB transcription factor MYB9; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	35%
Sma3	R2R3-MYB transcription factor MYB9	-	-	6.335e-06	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A5JYF3

Fln msg: your sequence is shorter than subject: 239 - 416

Fln protein: QDQDQDQDQEGNMEVESQRFKRRLNYSPESPANSHTNTNTTNSPPVSTAQQQIHRPLPLQSAFKSYSNNLDPPTLLSLSLPGSGMKEEDSKTDDRNQNSAPKKQLQQNVELNGFAGTQTQTQQLQYTFIPPYFQQPVMTPTSTNGYLKTDDAMVMMSEAVKMAVGQAVSLVFQASQSQCGSLGAVERSGFSASGGLLDIMREMIAKEVKNYMAMSQPNQCNQTGGLNCAMDSSLPRKV*

Protein Length: 240

Fln nts: TCAAGATCAAGATCAGGATCAAGATCAGGAGGGGAATATGGAAGTGGAATCGCAGAGATTCAAGAGGAGGCTCAACTACAGCCCCGAGTCTCCAGCTAACTCTCATACCAATACCAACACCACCAACAGTCCCCCAGTTTCCACAGCCCAACAACAAATCCACCGCCCGCTACCCCTGCAATCCGCCTTCAAATCTTACAGCAACAATCTGGATCCTCCAACGTTACTATCTCTATCCTTGCCTGGCTCTGGCATGAAGGAAGAAGATTCCAAAACTGATGACAGAAATCAGAATTCAGCCCCAAAGAAGCAGCTGCAGCAGAATGTTGAGCTCAATGGATTCGCAGGTACCCAAACCCAGACACAGCAGCTTCAATACACATTCATTCCTCCCTACTTTCAGCAGCCAGTGATGACACCTACAAGCACAAATGGCTACTTGAAAACAGATGATGCCATGGTCATGATGTCAGAGGCTGTGAAGATGGCAGTAGGGCAGGCAGTTTCATTGGTTTTTCAGGCTTCTCAATCTCAATGTGGGAGTTTAGGCGCAGTTGAAAGAAGCGGGTTTAGTGCTAGCGGAGGACTCCTGGATATCATGAGAGAAATGATTGCCAAGGAGGTTAAGAACTACATGGCGATGTCACAGCCGAATCAGTGCAATCAGACCGGTGGCCTAAATTGCGCAATGGATTCCTCTCTTCCAAGGAAAGTATGA___GAAATTCAATTCAAAACATAACTGCGATGGCTTAAGGACCATAAAAATTAACAAATTACTATCAGGCGAAATCAAAGAAATGCTTGTGGATGCAAGCCCACACAAAGCATAGAAGAAGAAATTATGATGAACTATATAAACTGTCTCCGAATATATAGTTCCAGCGTTTTTGGGATTGAGAAGCTCTGGTGTAGTAGAACACTATTGGAATAATG

Fln Alignment:

AllPine_a_c24077___GNMEVESQRFKRRLNYSPEXXXXXXXXXXXXXXXXXXXAQ---------QQIHRPLPLQSAFKSY-----------SNNXXXXXXXXXXXXXXGMKEEDSKTDDRNQNSAPKKQLQQNVELNGFAGXXXXXXXXXXXFIPPYFQQPVMTPTSTNGYLKTDDAMVMMSEAVKMAVGQAVSLVFQASQSQCGSLGAVERSGFSASGGLLDIMREMIAKEVKNYMAMSQPNQCNQTGGLN
A5JYF3_______________GDAEVESRRLKR-LNFSESPTSSDNNNNNNEEDTISGHCNSVAPGSSPVQQLHRPVPRQSAFNCYEAVKMHEEASASVSASGSAGAFDPPTSLSLSLPGSGSFSENNSSGECSPIEQSFETKS-AKFQAYQQQTGYSFADPF---PV------SGYLKTEEAMAMMSTAVKIAIGQALPLIFQLSSG--NSHGGCSGDSSNFGGSLLSIMREMIAKEVQNYTNGSQCS--NQGPGLN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
440	20	80			0.995493
441	20			80	0.995493
445	80			20	0.995493
540	20		80		0.995493
647	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain