SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99890

Length: 1513 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene99890 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-responsive transcription factor 1A n=1 Tax=Medicago truncatula RepID=A9P6A4_MEDTR	-	-	3.0e-31	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	AP2/ERF domain-containing transcription factor	-	-	2.238e-38	-

Source	Gene names
Sma3	24.t00040; 26.t00057; 27.t00030; ACRE1; At1g04370; At1g06160; At2g31230; At2g44840; At3g23220; At3g23230; At4g17490; At4g17500; At5g07580; At5g13330; At5g47220; At5g51190; B1234D02.6; B1331F11.13; BIERF3; Bo_7580; C635ERIPDM; CDBP; CMe-ERF1; Cr_7580; EREB

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G17500.1	ATERF-1, ERF-1 ethylene responsive element binding factor 1 chr4:9759405-9760211 FORWARD LENGTH=268	6.0e-37	46%
RefSeq	Arabidopsis thaliana	NP_567530.4	ethylene-responsive transcription factor 1A [Arabidopsis thaliana]	7.0e-37	46%
RefSeq	Populus trichocarpa	XP_002304302.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	1.0e-35	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQI3

Fln msg: Overlapping hits, possible frame ERROR between 304 and 298,

Fln protein: MPSSSVKQEVEYADMSVLDRTRSHLIGDFEPLFFSTANRVSDTTRNCNPEEENFVQTALTADSVDDSRREIKTETQITVxxxxCRPSLSVFVTRAGSFDCDQIPVDWGLENAVTPSVSPCLSAAWTKLPLDENDSEDMVLYGILKEAANNGWVPRTPREETVTEIKKESAFPVKLEVDIRQETKAIPPPKNVKKNTGRHYRGVRQRPWGKFAAEIRDSARQGARIWLGTFITAEEAALAYDRAAYKMRGSRALLNFPLQVGAEDGNTCNNTSSLEKEEESSGENNLNRKRQHEEMMSGSEVQWDSHCRMRLEDRKKMGSGMVEEMLSGKMATPPLTPRAIEMSFTGLLCSGQLMVN*

Protein Length: 358

Fln nts: TCAACGATCTTTCCACAAAGAGCTTAATAAGCTCTGAGTTTTATTCGCCTTTCACGAG_-_ATGCCATCCAGCAGCGTAAAACAAGAAGTCGAGTACGCAGATATGAGTGTCTTGGATCGAACTCGGAGCCATTTAATCGGCGATTTTGAACCCTTGTTCTTCAGTACGGCAAATAGGGTGTCTGATACCACAAGAAATTGCAACCCCGAAGAAGAAAACTTCGTCCAGACAGCACTCACAGCTGACTCAGTCGATGACAGCAGACGGGAAATAAAGACGGAGACTCAGATCACGGTCxxxxxxxxxxxxTGCCGTCCCTCGCTCTCCGTCTTCGTTACTCGAGCTGGATCATTCGATTGTGACCAAATTCCGGTTGACTGGGGACTCGAGAATGCCGTGACTCCGTCTGTGAGCCCTTGCTTATCTGCTGCCTGGACGAAGCTTCCGTTGGATGAAAATGATTCAGAGGACATGGTTTTGTACGGCATTCTCAAGGAGGCTGCCAACAACGGATGGGTTCCACGAACGCCCAGAGAAGAGACGGTGACGGAGATCAAGAAAGAATCTGCTTTTCCCGTCAAACTAGAGGTGGATATCCGTCAAGAAACGAAAGCCATACCACCGCCGAAGAATGTGAAGAAGAATACGGGGAGGCATTACAGGGGCGTGAGGCAGCGACCATGGGGGAAATTTGCGGCGGAAATAAGGGATTCTGCGCGGCAGGGAGCTAGAATTTGGCTTGGCACCTTCATTACCGCCGAGGAGGCTGCGCTCGCATATGACCGTGCCGCTTACAAGATGAGGGGCTCTAGGGCTCTGCTTAATTTCCCCCTCCAAGTTGGCGCAGAGGACGGTAATACATGTAATAATACGTCCAGTTTGGAAAAGGAAGAAGAGAGTAGTGGTGAGAATAATTTGAATAGGAAGAGGCAGCATGAGGAAATGATGAGTGGCAGTGAAGTGCAGTGGGATAGCCATTGTCGAATGAGATTGGAAGATAGAAAGAAGATGGGTAGCGGAATGGTTGAAGAGATGCTCAGTGGGAAAATGGCAACGCCACCACTCACGCCGAGGGCCATTGAGATGAGCTTCACTGGTTTGCTGTGCAGTGGACAACTCATGGTGAATTGA___GGTCTTCTCTGCATTATTTCATTCTTTCCCCGAGGGACAAAAATATATATCCATTATTTCTCCACAAGCCTGTACTTTATATGTATTCTTTCTATATGTACCAAAAGTTAGTATTCTTGTCTACTGGATCATTCAAAAATCTGCATATCTTGTTTGAGCGCTGCTATATTGACATAGAGAAGATGAAAAGGAAAATCATCTAATGACTTTGAGCTGTGGCTTTTTACATTTCTGTGATACATTTTTCCATATATGTAAAAAGACTAGTCACAAATCTTTATTATAGATTAACAATTTCATCCTATTGTGAGTTGATTCTCTCTTTTCCATCGAGAATCAGCTTACCCAAAAAAACAATATTTTGTGAACAATAAAATTTGGTTCC

Fln Alignment:

AllPine_a_c23969___MPSSSVKQEVEYADMSVLDRTRSHLIGDFEPLFFSTANRVSDTTRNCNPEEENFVQTALTADSVDDSRREIKTETQITVxxxCRPSLSVFVTRAGSFDCDQIPVDWGLENAVTPSVSPCLSAAWTKLPLDENDSEDMVLYGILKEAANNGWVPRTPREETVTEIKKESAFPVKLEVDIRQETKAI---PPPKNVKKNTGRHYRGVRQRPWGKFAAEIRDSARQGARIWLGTFITXXXXXXXXXXXXYKMRGSRALLNFPLQVGAEDGNTCXXXXXXXXXXXXXXXXXXNRKRQHEEMMSGSEVQWDSHCRMRLEDRKKMGSGMVEEMLSGKMATPPLTPRAIEMSFTGLLCSGQLMVN
C0PQI3_______________MAMSSGKQEVEYTEMSVLDQIRSHLLGDFEPSFFVTGNWGSDPTRNSSPEEENFIQTALTADSVDDSRRETETETLIAAxxxSRPLLSVSVTRHESFDWEKISVDWALKNSVTPSVSPCFSAAWTKLPLDENDSEDMVLYGILKEAATKGWLPRTPKEEPVTEIKKEAALPVKPDADIRQETGATPPPPPPPTVKNNAGRHYRGVRQRPWGKFAAEIRDSSRQGARVWLGTFTTAEEAALAYDRAAYKMRGSRALLNFPLQVGAEDSNTC----NNNTSTIEKVESNLSKKRQREEV----EVQWNRQCRVRFEDSNTMDHEMVEELLGGKLATPPLTPSGIDMSFTGFLSAGQLMVN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
171	80		20		0.995495
178	75			25	0.996473
506	33	66			0.997452
531		33		66	0.997452
665	40	60			1.0
668			40	60	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain