SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99873

Length: 271 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene99873
TCTGTCAACAGAGGAAACTATCAGATTCACTGATCTGGAACAGAAGGCATTGAATGACATGTTTGTCATTCTTTCTGATGTTTGGGTTGACAATGCAGAGACCATGGAAAAGCTAACCACAGTTTTGAATGGATATGAATCGGTGGAAATTGTACCTTCGTTGTTTGTTCTCATGGGAAACTTTTGTTCTCGACCATGCAATCTTGCTTTCCATGCGTTTCCAGAGCTTCGAACACAATTTGGTAAGCTTGGATCAATTATTGCTGAACAT

Ace file of the UniGene sp_v3.0_unigene99873 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana]	-	-	6.0e-28	64%
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	76%
Sma3	DNA polymerase epsilon subunit B-like protein	-	-	3.441e-09	-

Source	Gene names
Sma3	At5g22110; GSVIVT00017548001; OSJNBa0017J22.19; OSJNBa0034O12.11; Os05g0160800; OsI_18564; OsJ_17214; PHYPADRAFT_216321; POPTRDRAFT_806207; RCOM_0119080;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	epsilon DNA polymerase complex	GO:0008622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA-dependent DNA replication	GO:0006261	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	DNA polymerase alpha/epsilon, subunit B	IPR007185	-	-
Sma3	DNA polymerase epsilon, subunit B	IPR016266	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G22110.1	ATDPB2, CYL2, DPB2 DNA polymerase epsilon subunit B2 chr5:7331071-7334178 REVERSE LENGTH=526	3.0e-35	64%
RefSeq	Arabidopsis thaliana	NP_680197.2	DNA polymerase epsilon subunit B2 [Arabidopsis thaliana]	4.0e-35	64%
RefSeq	Populus trichocarpa	XP_002318325.1	predicted protein [Populus trichocarpa]	1.0e-37	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1I7Q3

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 90 - 498

Fln protein: LSTEETIRFTDLEQKALNDMFVILSDVWVDNAETMEKLTTVLNGYESVEIVPSLFVLMGNFCSRPCNLAFHAFPELRTQFGKLGSIIAEH

Protein Length: 91

Fln nts: TCTGTCAACAGAGGAAACTATCAGATTCACTGATCTGGAACAGAAGGCATTGAATGACATGTTTGTCATTCTTTCTGATGTTTGGGTTGACAATGCAGAGACCATGGAAAAGCTAACCACAGTTTTGAATGGATATGAATCGGTGGAAATTGTACCTTCGTTGTTTGTTCTCATGGGAAACTTTTGTTCTCGACCATGCAATCTTGCTTTCCATGCGTTTCCAGAGCTTCGAACACAATTTGGTAAGCTTGGATCAATTATTGCTGAACAT

Fln Alignment:

AllPine_a_c23926___LSTEETIRFTDLEQKALNDMFVILSDVWVDNAETMEKLTTVLNGYESVEIVPSLFVLMGNFCSRPCNLAFHAFPELRTQFGKLGSIIA
I1I7Q3_______________IPTEETLRLSSLENKAVNDMFVILSDVWLDSAETMEKLAVVLDGYDSVEVVPSLFVLMGNFCSRPCNLAFNSFEELRLQFGKLGEMIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain