SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99828

Length: 984 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene99828

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	diacylglycerol kinase [Arabidopsis thaliana]	-	-	0.0	70%
FL-Next	sp=Diacylglycerol kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Diacylglycerol kinase 1, putative, expressed	-	-	1.657e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Diacylglycerol kinase.	EC:2.7.1.107	-	8.938e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycerolipid metabolism	00561	8.938e-11	%
Sma3	Glycerophospholipid metabolism	00564	8.938e-11	%
Sma3	Metabolic pathways	01100	8.938e-11	%
Sma3	Phosphatidylinositol signaling system	04070	8.938e-11	%

Source	Gene names
Sma3	At5g07920; At5g63770; At5g63770/MBK5.25; DGK1; F13G24.120; GSVIVT00016252001; GSVIVT00019260001; LOC_Os03g31180; LOC_Os12g12260; LOC_Os12g38780; MXM12.16; OSJNBa0020H02.13; Os12g0224000; Os12g0576900; OsI_12126; OsI_37845; OsI_38855; OsJ_11338; OsJ_35604;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	diacylglycerol binding	GO:0019992	Molecular Function	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Protein kinase C-like, phorbol ester/diacylglycerol binding	IPR002219	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G07920.1	DGK1, ATDGK1 diacylglycerol kinase1 chr5:2525197-2528396 REVERSE LENGTH=728	70%
RefSeq	Arabidopsis thaliana	NP_196409.1	diacylglycerol kinase1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002318591.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q39017

Fln msg: Overlapping hits, possible frame ERROR between 176 and 140, your sequence is shorter than subject: 248 - 728

Fln protein: ADSECDGDQSLKSNKEYQNSDHTVKFLNNYLGIGCDAKVALDIGIxxxxxxxxxxxxxxNKLLYAREGAKDIMDRTCADLPWHIRLEVDGVDIEVPEDAEGVLVTNIGSYMGGVDLWQNEEDREDDFHRQAMHDKVLEVVCICGTWHLGKLQVGLSRARRLAQGQFIRIHTFAAFPVQVDGEPWIQQPCTLRISYHGQAFMLKRVSEEPLGHAAAIMVDVLESAECGGVINPSQKRHLLQEMALNLA*

Protein Length: 249

Fln nts: CAGCAGATTCAGAATGTGATGGCGATCAATCATTAAAATCCAATAAAGAATATCAGAACAGTGACCATACGGTGAAATTCTTGAACAATTATCTTGGAATTGGATGTGATGCAAAGGTTGCATTAGACATTGGTATCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATAAGCTTTTGTATGCAAGAGAAGGTGCCAAGGACATTATGGATAGAACATGTGCTGATTTGCCTTGGCATATTCGACTAGAAGTGGATGGTGTGGACATTGAAGTTCCTGAGGATGCAGAAGGTGTCCTTGTAACGAACATTGGAAGCTACATGGGAGGAGTAGATTTGTGGCAGAATGAAGAGGACCGTGAGGATGACTTTCATCGACAGGCCATGCATGATAAGGTGCTTGAAGTTGTCTGTATTTGTGGAACATGGCATCTTGGAAAGCTCCAGGTGGGTCTTTCTCGTGCCCGAAGGTTAGCGCAAGGTCAGTTCATCAGAATCCATACATTTGCAGCTTTTCCAGTCCAGGTTGATGGAGAACCATGGATTCAGCAGCCTTGTACGCTACGTATATCATATCATGGACAGGCATTTATGCTGAAGAGAGTCTCCGAGGAGCCGTTGGGCCATGCCGCTGCAATCATGGTAGACGTACTTGAGAGTGCTGAATGCGGTGGAGTCATTAATCCCTCGCAAAAGAGACATCTTCTCCAAGAAATGGCTCTCAATCTTGCATAGCCAGGGGAGGAGTCCAGTTGAAAATTTCAAGCTCACTTCTCTATTCCTTTAATCCTATAAAGGGGGCAATTACTTCTCGTGTATCTTCGGTTGGCCTCAACAGATTTGTCGGGAGATGGAACTTTGGCCACAACGTGGTCAGGAAAGCCACTGCACTTTGTAACTTATAATCGTGTGGCTAATCACTCGCAGGTTCATTCAATTCAGCATCGGTTCTGTTTGTACTGTATATCTTTTAA

Fln Alignment:

AllPine_a_c23745___KFLNNYLGIGCDAKVALDIGILxxxxxxxxxxxxLNKLLYAREGAKDIMDRTCADLPWHIRLEVDGVDIEVPEDAEGVLVTNIGSYMGGVDLWQNEEDREDDFHRQAMHDKVLEVVCICGTWHLGKLQVGLSRARRLAQGQFIRIHTFAAFPVQVDGEPWIQQPCTLRISYHGQAFMLKRVSEEPLGHAAAIMVDVLESAECGGVINPSQKRHLLQEMALNL
Q39017_______________KYMNNYIGVGCDAKVALEIHNLxxxxxxxxxxxxMNKVLYAREGARSIMDRTFEDFPWQVRVEVDGVDIEVPEDAEGILVANIGSYMGGVDLWQNEDETYENFDPQSMHDKIVEVVSISGTWHLGKLQVGLSRARRLAQGSAVKIQLCAPLPVQIDGEPWNQQPCTLTISHHGQAFMLKRAAEEPLGHAAAIITDVLENAETNQVINASQKRTLLQEMALRL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
613	60		20	20	0.992596
615	80		20		0.9955
901		75		25	0.996473
973		33		66	0.997476
975		66		33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain