SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99800

Length: 559 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene99800
ATGGGATAGTAGGAGGTTTTGATCTCATTATTGGTGGAAGCCCATGTAATAATCTGACAGGGAGCAACAGGTGCACAAGAGATGGGCTGGAGGGGAAGCATTCCTCTCTTTTCTTTGAATTTCCACGGATTGTGAATGTTGTGAGGCATGTAATGCGTTCAAAAGGTGCTTCCAAAAAACGTAATGTTCTGTGATTCTTAACTGCATGCTTTCATGCTTTCAATTTTGTTTTCTGTAGACATTCTCAAATTACTTGTTTCTGAACTAGTAGACCTATATTTCTGGTGGTCACGAAAACCTTTACCCCCTCCAAGATTTTTGGAAAAGACGGTATAGCATATGAACTAGTAGACGTATTTTCTCTACTATATTTTCTGGTGGTCAAGAAAACCTTTACCACCTCCAAGATTTTTGGAAAAGACTGTGTAGCATATGTTCTGGTATATATGGTTGGAAATGTTTCCAAGGAAAGATGTTCTGATACATGGTTGGAACTGTTGCCAAGGACAGCACTAAGAACCAAAAACTTGCCTTAATGTGGTGTATCTACTCCATATCG

Ace file of the UniGene sp_v3.0_unigene99800 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DRM-type DNA-methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTT0_ELAGV	-	-	2.0e-13	70%
FL-Next	sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Sma3	Putative DNA cytosine methyltransferase Zmet3	-	-	3.223e-08	-

Source	Gene names
Sma3	At5g14620; DMT905; DRM2; DRM5; F8M21_270; GSVIVT00020712001; LOC_Os03g02010; LOC_Os11g01810; NtDRM1; OSJNBb0043C10.1; Os03g0110800; Os11g0109200; OsI_09692; OsI_27322; OsI_34820; OsJ_09131; OsJ_32669; PHYPADRAFT_133529; PHYPADRAFT_148057; POPTRDRAFT_64162

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA (cytosine-5-)-methyltransferase activity	GO:0003886	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	methylation-dependent chromatin silencing	GO:0006346	Biological Process	-
Sma3	histone H3-K9 methylation	GO:0051567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Stress responsive alpha-beta barrel	IPR013097	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G14620.1	DRM2, DMT7 domains rearranged methyltransferase 2 chr5:4715429-4718578 REVERSE LENGTH=626	4.0e-15	71%
RefSeq	Arabidopsis thaliana	NP_196966.2	DNA (cytosine-5)-methyltransferase DRM2 [Arabidopsis thaliana]	5.0e-15	71%
RefSeq	Populus trichocarpa	XP_002300046.1	DNA methyltransferase [Populus trichocarpa]	2.0e-15	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9M548

Fln msg: your sequence is shorter than subject: 64 - 626

Fln protein: GIVGGFDLIIGGSPCNNLTGSNRCTRDGLEGKHSSLFFEFPRIVNVVRHVMRSKGASKKRNVL*

Protein Length: 65

Fln nts: ATGGGATAGTAGGAGGTTTTGATCTCATTATTGGTGGAAGCCCATGTAATAATCTGACAGGGAGCAACAGGTGCACAAGAGATGGGCTGGAGGGGAAGCATTCCTCTCTTTTCTTTGAATTTCCACGGATTGTGAATGTTGTGAGGCATGTAATGCGTTCAAAAGGTGCTTCCAAAAAACGTAATGTTCTGTGA___TTCTTAACTGCATGCTTTCATGCTTTCAATTTTGTTTTCTGTAGACATTCTCAAATTACTTGTTTCTGAACTAGTAGACCTATATTTCTGGTGGTCACGAAAACCTTTACCCCCTCCAAGATTTTTGGAAAAGACGGTATAGCATATGAACTAGTAGACGTATTTTCTCTACTATATTTTCTGGTGGTCAAGAAAACCTTTACCACCTCCAAGATTTTTGGAAAAGACTGTGTAGCATATGTTCTGGTATATATGGTTGGAAATGTTTCCAAGGAAAGATGTTCTGATACATGGTTGGAACTGTTGCCAAGGACAGCACTAAGAACCAAAAACTTGCCTTAATGTGGTGTATCTACTCCATATCG

Fln Alignment:

AllPine_a_c23625___GGFDLIIGGSPCNNLTGSNRCTRDGLEGKHSSLFFEFPRIVNVVRHVMR
Q9M548_______________GGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLFFEYCRILEVVRARMR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
436	33	66			0.997452
456			66	33	0.997452
559		66	33		0.997476
560		66		33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain