SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99707

Length: 970 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene99707 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MDR-like ABC transporter n=1 Tax=Catharanthus roseus RepID=A5X7X7_CATRO	-	-	8.0e-27	53%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	61%
Sma3	Multidrug resistance protein 1, 2, putative	-	-	1.7e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphate-transporting ATPase.	EC:3.6.3.27	-	7.708e-11	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	1.2e-10	-

Source	Gene names
Sma3	At2g47000; At3g62150; F14M4.17; GSVIVT00003368001; GSVIVT00003375001; GSVIVT00019727001; GSVIVT00028243001; MDR17; MDR4; Os01g0290800; OsI_01485; OsI_03383; OsI_18374; OsJ_01389; OsJ_03121; OsJ_17037; P0706B05.3; PGP21; PGP4; POPTRDRAFT_711431; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	auxin efflux	GO:0010315	Biological Process	-
Sma3	basipetal auxin transport	GO:0010540	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002320939.1	multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]	3.0e-18	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Separated hits, possible frame ERROR between 233 and 370, Unexpected STOP codon at 3' end. Distance to subject end: 261 aas, your sequence is shorter than subject: 180 - 1316

Fln protein: SLLPTVVASFYELPHMLRKDTRLWALMYIVLQATCLLMGPTQVICFAVAGGRLVRPIRSLTFNKIVYQEFGWFDDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAIGARLSTDAATVRSIVEDSVQNISTITAGIVIAFSAN*KLALLILALLHLLGL*G*

Protein Length: 181

Fln nts: CGTCGTTGCTTCCAACTGTTGTTGCCAGTTTTTACGAACTTCCACATATGCTTCGAAAAGATACCAGATTATGGGCACTTATGTATATAGTTTTGCAAGCAACATGCCTCCTCATGGGACCAACACAGGTCATCTGTTTTGCTGTTGCTGGTGGCAGGCTTGTGCGACCTATACGATCCTTGACATTTAACAAGATTGTTTACCAGGAGTTTGGATGGTTTGATGATAGTGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCAATAGGTGCAAGATTATCAACAGATGCTGCGACAGTGCGTAGTATAGTGGAAGATAGTGTTCAGAATATTTCAACAATCACTGCTGGTATTGTTATAGCTTTTTCAGCAAACTAGAAGTTGGCACTTTTGATATTAGCTCTCCTGCATCTGCTAGGTCTTTAAGGTTGAGTTCCAGTGAAGTTCCTGCAGGGTTTTTCTGCTGATGCAAAGGTTAGGAATGTCATTGGCCCTGAAAAGAGTGTACAGACTGCATATTGCTAGACATGGTTTATAAATTATATTAGAATATGTATAATTGGACAATTTTTTCAATTGTGATTCATGGTTTAATACAAATCGGACTTTGAAGGAGGATTCTCCTCTTCCTAAAGAGCTTTAAACATTTTGGGATGTTATTACTATAGAAAGGGATCATATTCCAGGTGATGTATGAGGAAGCCAGTTAGGTTGCAAATGATGCTGTCTTCCTAAAGAGCTTTAAACATTTTGGGATGTTATTACTATAGAAAGGGATCATATTCCAGGTGATATATGAGGAAGCCAAATAGGTTGCAAATGATGCTGTTTGGAAGCATTCGAACCGTTTCCTCCTTTTCTG

Fln Alignment:

AllPine_a_c23268___LLPTVVASFYELPHMLRKDTRLWALMYIVLQATCLLMGPTQVICFAVAGGRLVRPIRSLTFNKIVYQEFGWFDDSDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAIGARLSTDAATVRSIVEDS----VQNISTITAGIVIAFSAN*KXXXXXXXXXXXXXXXX*VPVKFLQGFSADAKV
E6Y0T0_______________LLSSVIKVFYEPPHELRKDAKFWALMFIVLAVTCFIVAPTQMYCFSIAGGRLVQRIRSLTFSKVVYQEISWFDDNExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAISARLSTDAATVRSLVGDALSLVVQNIATIIAGIVISFTANWLLALLILAIVPLLGLQGYMQVKFMTGFTADAKL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
460		80	20		0.995493
664	33		66		0.997452
705	33	66			0.997461
767	66			33	0.997452
830	25	75			0.996473
852		25		75	0.996473
859		75		25	0.996473
864			75	25	0.996473
902		60		40	1.0
930		20		80	0.995493
933		25	75		0.996473
952			66	33	0.997452
956	66		33		0.997452
957		66		33	0.997452
958	66		33		0.997452
964		25		75	0.996486
965		25	75		0.996483
966	33		66		0.997467
970		66		33	0.997476
971	66	33			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain