SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99551

Length: 1149 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene99551

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-FucT domain containing protein	-	-	0.0	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Growth regulator like protein	-	-	2.79e-08	-

Source	Gene names
Sma3	AT4g16650; At2g44500; At2g44500/F4I1.31; At3g07900; At4g16650; At5g63390; F17A17.24; GSVIVT00008872001; GSVIVT00017906001; H0211B05.12; OSJNBb0034G17.19; OSJNBb0078D11.5; Os04g0563000; OsI_16985; OsJ_15784; PHYPADRAFT_129656; PHYPADRAFT_184761; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3		IPR004348	-	-
Sma3	Putative harbinger transposase-derived nuclease	IPR006912	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44500.1	O-fucosyltransferase family protein chr2:18374447-18376435 FORWARD LENGTH=573	72%
RefSeq	Arabidopsis thaliana	NP_181978.1	axi 1 protein-like protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002330879.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ81

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 382 - 634

Fln protein: VVTLAVTQQRNQIVDAVVIARILEASLVIPILQVNAIWEDDSEFSDIFDVEHFKKFLKNDVRIVSSLPSTHLMSRPVEEKSTPLHVSPGWIRSRYLRRLNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFHALRFAAPIQAVGDKLAQRMWKQGPYVALHLRLEKDVWVRTGCLPGLSSKYDEIIRRERKTRPDLLTARSNMSYHERKLAGLCPLNAKEVARLLKALGAPRTTRIYWAGGEPLGDQEALEPLKKHFPNFHNKQTLALPGELDSFSGKASLLAAIDYIVSLNSDVFMPSHGGNMGHAIQGHRAYAGHRKHITPNKRQMLPYFLDKTLSEQDFNRIIRQLHNESLGQPEYRTDKPGRDVIAYPVPECMCKSES

Protein Length: 383

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCAGCGCAATCAGATCGTCGACGCGGTTGTCATTGCCAGAATTCTGGAGGCGTCTCTGGTTATTCCCATTCTGCAAGTCAATGCAATTTGGGAAGACGACAGTGAGTTCTCTGATATTTTTGACGTCGAGCATTTCAAGAAATTTCTCAAAAACGACGTCAGAATCGTCTCTTCGCTGCCTTCTACACATTTAATGTCAAGGCCAGTGGAGGAAAAGAGCACACCCCTCCATGTTAGTCCCGGTTGGATTCGATCTCGTTACCTCAGGCGGTTGAATAGGGAAGGCGTTCTTCTTCTTCGTGGACTGGACTCCAGGCTTTCCAAGGATCTGCCCTCCGATCTTCAGAAACTTCGCTGCAAGGTTGCATTTCATGCATTGAGGTTTGCAGCACCTATACAAGCTGTGGGGGATAAGCTGGCGCAGAGAATGTGGAAGCAGGGCCCTTATGTGGCTTTGCATTTACGACTGGAGAAAGATGTATGGGTACGAACCGGATGCCTCCCTGGTTTGAGCTCTAAATACGACGAAATAATCCGTCGGGAGAGGAAAACCCGGCCAGATCTTCTCACAGCGCGCTCCAACATGAGTTACCATGAACGCAAGCTTGCGGGCCTTTGCCCCTTAAATGCCAAGGAGGTCGCCAGGCTTCTAAAAGCTCTGGGAGCACCAAGAACTACTCGCATATACTGGGCAGGAGGAGAACCACTAGGAGATCAAGAAGCTCTGGAACCATTGAAGAAACATTTCCCGAATTTTCACAACAAACAGACCCTTGCATTGCCTGGGGAGCTGGATTCTTTTAGTGGGAAAGCATCCCTTCTTGCTGCAATTGACTATATTGTTTCATTAAACAGCGATGTTTTCATGCCATCCCATGGAGGAAACATGGGCCATGCAATTCAGGGCCACAGGGCATATGCGGGTCACAGAAAGCATATAACTCCCAACAAAAGACAGATGCTTCCTTACTTCCTTGACAAAACATTGTCTGAACAAGACTTCAATAGGATTATCAGGCAACTGCATAATGAGTCACTTGGTCAGCCAGAATACAGAACAGATAAACCAGGCCGTGATGTTATAGCTTACCCTGTTCCAGAATGCATGTGCAAATCTGAATCAAT

Fln Alignment:

AllPine_a_c22551___VTQQRNQIVDAVVIARILEASLVIPILQVNAIWEDDSEFSDIFDVEHFKKFLKNDVRIVSSLPSTHLMSRPVEEKSTPLHVSPG-WIRSRYLRRLNREGVLLLRGLDSRLSKD-LPSDLQKLRCKVAFHALRFAAPIQAVGDKLAQRMWKQG-PYVALHLRLEKDVWVRTGCLPGLSSKYDEIIRRERKTRPDLLTARSNMSYHERKLAGLCPLNAKEVARLLKALGAPRTTRIYWAGGEPLGDQEALEPLKKHFPNFHNKQTLALPGELDSFSGKASLLAAIDYIVSLNSDVFMPSHGGNMGHAIQGHRAYAGHRKHITPNKRQMLPYF--LDK-TLSEQDFNRIIRQLHNESLGQPEYRT--DKP--GRDVIAYPVPECMCK
B8LQ81_______________LNQMRTGICDMVAVARIMNATLVLPSLDHSSFWTDPSDFEDIFDWHHFTKTLREDVRIVKSLPASYAKIEPLQK--APISWSKHTYYKDEMLPLLKKQKVIHFTHTDSRLANNGLPNSIQKLRCRTNYQALRYTQSIEELGKKLVARMRKNGKPYIALHLRYEKDMLAFTGCAHNLTLGEAEELREMRYNVKHW--KEKDIDAEEKRKQGGCPLTPRETALLLKALGYLPTTNIYIAAGEIYGNG-SMRALQNEFPNVFSHSTLATEEELEPFKNYQNRLAALDYILALESDVFLYTYDGNMAKAVQGHRRFEGFRKTINPDRENLIKLIDEMDQGQISWNSFASKVKATHSNRVGAPYLREAGDFPRLEENFYANPFPGCICE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
306	50		50		1.0
346			50	50	1.0
424		50		50	1.0
448			83	16	0.994512
492	20			80	0.995493
494		80		20	0.995493
496	80			20	0.995493
531	25	75			0.996473
533		75		25	0.996473
549	66	33			0.997453
729		14	85		0.993533
731			85	14	0.993533
732			85	14	0.993533
1096		33	66		0.997452
1099	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
312	323	TTC TTC TTC TTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain