SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99464

Length: 881 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene99464 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor ser/thr protein [Oryza sativa Japonica Group] gb\|ABF95119.1\| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group]	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	ATP binding protein, putative	-	-	3.945e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.733e-09	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	8.218e-08	-

Source	Gene names
Sma3	24K23.9; AT1G29720; AT1G53420; AT1G56145; AT3G14840; AT3G24550; At1g16670; At1g29720; At1g56145; F14G9.24; F19K19.4; F1N18.22; F5A18.8; GSVIVT00002709001; GSVIVT00006101001; GSVIVT00016037001; GSVIVT00018818001; GSVIVT00023432001; GSVIVT00023436001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002323571.1	predicted protein [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg: Separated hits, possible frame ERROR between 396 and 531, Distance to subject end: 39 aas,

Fln protein: MSNNGLHKHLFGEMRNCLNWENRVDIIVGTARGLSYLHEDSNMRIIHRDIKCANILLDDRFHPKIADFGMARCLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKCVDVTVPHPMSILLEWAWNSYKQGNVLDIVDPKLEGQYPREQGLRVITIALLCTQGSWGQQPAMSQVVAMLTTDIEIRVQPTQ

Protein Length: 238

Fln nts: TACTCGGATGCTGGTCAGGAGGCTCACTTCTGACCAGCATCCGAGTAGACGAACAAGATTGCGGTGACGGACGCTGGTCAGGAGGCTCACTTCTGTCCGGAACTCCTCCGCGCCTTGAGTATTCTCGGATGTTGCACGCGTGGGAACCAACGCTTGCTGGTTTATGAATTT_-_ATGTCAAATAACGGTCTTCACAAGCATTTGTTTGGAGAGATGCGAAATTGTCTAAACTGGGAAAACCGTGTAGACATTATAGTGGGCACAGCTCGAGGTCTGTCATATCTGCACGAGGATTCGAACATGCGCATTATACATAGAGATATCAAATGCGCAAATATACTGTTAGATGACAGATTTCACCCTAAAATAGCAGATTTTGGAATGGCAAGATGTCTTCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCTACACCGCACCAGAGTATGCCGTTCATGGGCAATTGACGGAAAAGGCAGACGTTTACAGTTATGGGATCGTGGTTCTCGAGATTGTGAGTGGGAGAAAGTGTGTAGATGTAACAGTGCCACACCCTATGAGCATTCTTTTGGAATGGGCTTGGAATAGCTATAAACAGGGTAATGTTTTGGATATTGTTGATCCAAAATTAGAAGGACAGTACCCAAGAGAACAGGGATTAAGGGTGATCACAATTGCACTTCTTTGCACACAAGGTTCTTGGGGACAGCAGCCGGCGATGTCACAGGTTGTCGCCATGTTAACTACCGATATAGAGATTCGTGTTCAGCCTACACAA

Fln Alignment:

AllPine_a_c22095___MSNNGLHKHLFGEMRNCLNWENRVDIIVGTARGLSYLHEDSNMRIIHRDIKCANILLDDRFHPKIADFGMARCLPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKCVDVTVPHPMSILLEWAWNSYKQGNVLDIVDPKLEGQYPREQGLRVITIALLCTQGSWGQQPAMSQVVAMLTTDIEIRVQPTQ
B8LLL8_______________MSQNSLHKHLFGEIQNVLSWEKRLGIIVGTARGLTYLHEDSNVRIIHRDIKCGNILLDDRFHPKIADFGLARFFPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKSVNARLDASMQLLLEWAWNQFQQDQVLDIVDSSLEGQYPREQVLRVIRIALLCTQGSWALRPAMSEVVSMLTNNSEITVQPTQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
463		33		66	0.997452
594	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain