SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99460

Length: 501 nt

UniGene Fasta

>sp_v3.0_unigene99460
CGTCGTGACCTTGGCTGTCACTCAGTTCAAAATACCAACAATAAAATAATGGCAGAGGAGCTCAAGAAGCTTACAGGAGGTATTCTACTTTTGAGAAATAAGTTCTTCATTATAATTTATAGAGGAAAAGACTTTCTTCCTCCACTTGTTGCTACGGTATTAGCAGAGAAAGCAGCAGAGGCAAAGGTACATCAAGATGAAGAAGAAATTGCAAGGTCAGAAGCTGCTGCAGCAGTTCAGGCAAGAGCTGATGTGGGAACCAGTATTGCTGGCACACTAGCTGAAACCTTTGAAGCCCAAGCTAAATGGATGATGGATAGTGAAGAGCAAGAAAAGATGAGAGCTGCTGCTGCCGAGGCTAAACGGGCTGAGGCAGTCAGGAGAGTTCAGCGAAAGCTGGCTATTGCACAATTAAAGAAGCAGAAAGCGGAGCAAGATCTAGCTAAATTAGAAGTATCGTTGGCACCTGTTGAAAAACCAGCGGATCAAGAGACATTAACT

Ace file of the UniGene sp_v3.0_unigene99460

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize).	-	-	0.0	58%

Source	Gene names
Sma3	At3g18390; GSVIVT00016549001; GSVIVT00017691001; GSVIVT00020129001; LOC_Os11g37990; OJ1001_G09.2; OJ1506_A04.16; OSJNBa0079H23.10; Os05g0551900; Os09g0363100; Os11g0592400; OsI_16687; OsI_20893; OsJ_15500; OsJ_19463; OsJ_34482; P0560C03.15; PHYPADRAFT_109

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA-binding, CRM domain	IPR001890	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G18390.1	EMB1865 CRS1 / YhbY (CRM) domain-containing protein chr3:6313572-6317584 FORWARD LENGTH=848	3.0e-23	58%
RefSeq	Arabidopsis thaliana	NP_188468.1	CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]	3.0e-23	58%
RefSeq	Populus trichocarpa	XP_002317913.1	predicted protein [Populus trichocarpa]	2.0e-25	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FYT6

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 167 - 715

Fln protein: RRDLGCHSVQNTNNKIMAEELKKLTGGILLLRNKFFIIIYRGKDFLPPLVATVLAEKAAEAKVHQDEEEIARSEAAAAVQARADVGTSIAGTLAETFEAQAKWMMDSEEQEKMRAAAAEAKRAEAVRRVQRKLAIAQLKKQKAEQDLAKLEVSLAPVEKPADQETLT

Protein Length: 168

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCAAAATACCAACAATAAAATAATGGCAGAGGAGCTCAAGAAGCTTACAGGAGGTATTCTACTTTTGAGAAATAAGTTCTTCATTATAATTTATAGAGGAAAAGACTTTCTTCCTCCACTTGTTGCTACGGTATTAGCAGAGAAAGCAGCAGAGGCAAAGGTACATCAAGATGAAGAAGAAATTGCAAGGTCAGAAGCTGCTGCAGCAGTTCAGGCAAGAGCTGATGTGGGAACCAGTATTGCTGGCACACTAGCTGAAACCTTTGAAGCCCAAGCTAAATGGATGATGGATAGTGAAGAGCAAGAAAAGATGAGAGCTGCTGCTGCCGAGGCTAAACGGGCTGAGGCAGTCAGGAGAGTTCAGCGAAAGCTGGCTATTGCACAATTAAAGAAGCAGAAAGCGGAGCAAGATCTAGCTAAATTAGAAGTATCGTTGGCACCTGTTGAAAAACCAGCGGATCAAGAGACATTAACT

Fln Alignment:

AllPine_a_c22083___VQNTNNKIMAEELKKLTGGILLLRNKFFIIIYRGKDFLPPLVATVLAEKAAEAKVHQD
Q9FYT6_______________IQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQR--EAQVHDE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
158		25	75		1.0
160	75		25		1.0
161		25		75	1.0
166	75			25	1.0
167			75	25	1.0
168	75			25	1.0
169		25	75		1.0
170	75			25	1.0
171	75	25			1.0
172	75			25	1.0
173			75	25	1.0
174		75	25		1.0
458			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain