SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99442

Length: 762 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene99442 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[GEPR] COG0477 Permeases of the major facilitator superfamily	-	-	1.0e-11	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Sialin, putative	-	-	8.984e-13	-

Source	Gene names
Sma3	ANTR1; ANTR2; ANTR3; ANTR4; A_IG005I10_nn; At2g29650; At2g38060; At3g46980; At4g00370; F5I10.7; GSVIVT00021464001; GSVIVT00024146001; GSVIVT00024164001; MICPUCDRAFT_44722; MICPUN_98168; MtrDRAFT_AC161399g10v2; OJ1003_C09.34; OJ1576_F01.6; OSJNBa0036E02.3;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	inorganic diphosphate transmembrane transporter activity	GO:0030504	Molecular Function	-
Sma3	sodium ion binding	GO:0031402	Molecular Function	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G46980.3	" PHT4;3 phosphate transporter 4;3 chr3:17307294-17309899 REVERSE LENGTH=534"	64%
RefSeq	Arabidopsis thaliana	NP_190282.2	putative anion transporter 4 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002298326.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
333	66		33		0.997452
534	16		83		0.994512
536			83	16	0.994512
537		83	16		0.994512
538	83			16	0.994512
562	14	85			0.993533
565		85		14	0.993533
613		12		87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain