SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99357

Length: 421 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene99357
TCAGCAAGACTGTTGGTCTACGAATACATGATCAATGGATCCCTCAATTCCTTCTTGTTCCAGAGAAACCAGAGTGATGAACAGCAGCTCAAGGTGCTGGACTGGAAACAAGATTCGGCATCGCGTGGGGACTGCCAAGGAATCATTTATCTCCACGAGAAGTGCCGGAACTGCATCATCCACTGCGACATCAAGCCGGAGAACATCCTCCTGGATTCCAATTTCTGCCCCAAGCTGGCCGATTTCGGTCTGGCAAAACTCCTGGGCAAAGAGTATAGTCATGTTTTGACGACAATGAGAGGAACCAGAGGGTACTTGGCTCCCGAGTGGCTATCGGGGCTGCCCATCACTGCCAAGGCCGACGTCTACAGCTTCGGTATGACATTGCTGGAAATAATTGCGGGAAGGAGAAACATACATT

Ace file of the UniGene sp_v3.0_unigene99357 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AED93254.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	S-receptor kinase, putative	-	-	4.567e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	7.742e-08	-

Source	Gene names
Sma3	17L07.5; ACRE11; AT4g00340; AT4g32300; A_IG005I10.19; At1g34300; At2g19130; At4g32300; At5g35370; B1099D03.46; B1099D03.51; B1423D04.25; DUPR11.18; F10M6.60; F23M19.5; F5I10.19; F8B4.10; GSVIVT00000338001; GSVIVT00001733001; GSVIVT00001735001; GSVIVT00002

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	peptidoglycan-based cell wall	GO:0009274	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	thylakoid membrane	GO:0042651	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	plastoquinol--plastocyanin reductase activity	GO:0009496	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	peptidoglycan biosynthetic process	GO:0009252	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Glycosyl transferase, family 51	IPR001264	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3		IPR001899	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Long hematopoietin receptor, Gp130 family 2, conserved site	IPR003529	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR005806	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Cytochrome b6-f complex Fe-S subunit	IPR014909	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G24080.1	Protein kinase superfamily protein chr5:8139334-8141014 REVERSE LENGTH=470	65%
RefSeq	Arabidopsis thaliana	NP_568438.1	protein kinase family protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002325680.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 140 - 431

Fln protein: SARLLVYEYMINGSLNSFLFQRNQSDEQQLKVLDWKQDSASRGDCQGIIYLHEKCRNCIIHCDIKPENILLDSNFCPKLADFGLAKLLGKEYSHVLTTMRGTRGYLAPEWLSGLPITAKADVYSFGMTLLEIIAGRRNIH

Protein Length: 141

Fln nts: TCAGCAAGACTGTTGGTCTACGAATACATGATCAATGGATCCCTCAATTCCTTCTTGTTCCAGAGAAACCAGAGTGATGAACAGCAGCTCAAGGTGCTGGACTGGAAACAAGATTCGGCATCGCGTGGGGACTGCCAAGGAATCATTTATCTCCACGAGAAGTGCCGGAACTGCATCATCCACTGCGACATCAAGCCGGAGAACATCCTCCTGGATTCCAATTTCTGCCCCAAGCTGGCCGATTTCGGTCTGGCAAAACTCCTGGGCAAAGAGTATAGTCATGTTTTGACGACAATGAGAGGAACCAGAGGGTACTTGGCTCCCGAGTGGCTATCGGGGCTGCCCATCACTGCCAAGGCCGACGTCTACAGCTTCGGTATGACATTGCTGGAAATAATTGCGGGAAGGAGAAACATACATT

Fln Alignment:

AllPine_a_c21646___RLLVYEYMINGSLNSFLFQRNQSDEQQLKVLDWK-QDSASRGDCQGIIYLHEKCRNCIIHCDIKPENILLDSNFCPKLADFGLAKLLGKEY-SHVLTTMRGTRGYLAPEWLSGLPITAKADVYSFGMTLLEIIAGRRNI
A9NM60_______________RILVYEFMANGSLDRWLFDSD-------KWLDWKTRYSIALDTARGLAYLHEESRLCILHLDVKPQNILVDEYFKAKVSDFGMARCLKRDIESHLVTGVRGTPGYMAPEWLLGAGITSKSDVFSYGMVLLEIISGRRNV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain