SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99239

Length: 349 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene99239
GGTATAGATTGTTTAAACCTTAACGTTCTTAGTGAGATTCCTGGTCATGCTAGAGGCTGCAAGAACTGCCATATAGTTGGTTGTTAACGAGATATTTCGAATTACACAGAACCTGATCTTCTTATGTATGTGATTGTATGAGAATATTTTAACATCTCTCTCAGGAATAAAGCAAGAGATAGAGAAAGCCAGAGAGAACCTTGACTTGAAGGATGTAGATTATGAAGCCACCATGGCTGCAAAACTAGCAATTGCTAAGAAGATTTTCTACTTAGAGAAAGATGAAGTGCTTAATTCAGATGCTTTCCAGAAGTTCTTCCAGGAGAATAAGGCCTGGCTGGAACCGTAT

Ace file of the UniGene sp_v3.0_unigene99239 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative 4-alpha-glucanotransferase (ISS) [Ostreococcus tauri] emb\|CAL55835.1\| putative 4-alpha-glucanotransferase (ISS) [Ostreococcus tauri]	-	-	2.0e-08	39%
FL-Next	sp=4-alpha-glucanotransferase DPE2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	4-alpha-glucanotransferase	-	-	6.695e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	4-alpha-glucanotransferase.	EC:2.4.1.25	-	2.79e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		2.79e-08	%
Sma3	Metabolic pathways	01100		2.79e-08	%

Source	Gene names
Sma3	At2g40840; DE2; DPE2; GSVIVT00023316001; Os07g0662900; OsI_27219; OsJ_25466; P0453E03.120; PHYPADRAFT_147034; POPTRDRAFT_255128; POPTRDRAFT_818982; RCOM_1271340;

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	4-alpha-glucanotransferase activity	GO:0004134	Molecular Function	-
Sma3	heteropolysaccharide binding	GO:0010297	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	maltose catabolic process	GO:0000025	Biological Process	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate binding module family 20	IPR002044	-	-
Sma3	Glycoside hydrolase, family 77	IPR003385	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40840.1	DPE2 disproportionating enzyme 2 chr2:17045368-17050779 FORWARD LENGTH=955	3.0e-21	67%
RefSeq	Arabidopsis thaliana	NP_181616.3	4-alpha-glucanotransferase [Arabidopsis thaliana]	4.0e-21	67%
RefSeq	Populus trichocarpa	XP_002323208.1	predicted protein, partial [Populus trichocarpa]	6.0e-21	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RXD9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 540 aas, your sequence is shorter than subject: 116 - 955

Fln protein: V*IV*TLTFLVRFLVMLEAARTAI*LVVNEIFRITQNLIFLCM*LYENILTSLSGIKQEIEKARENLDLKDVDYEATMAAKLAIAKKIFYLEKDEVLNSDAFQKFFQENKAWLEPY

Protein Length: 117

Fln nts: GGTATAGATTGTTTAAACCTTAACGTTCTTAGTGAGATTCCTGGTCATGCTAGAGGCTGCAAGAACTGCCATATAGTTGGTTGTTAACGAGATATTTCGAATTACACAGAACCTGATCTTCTTATGTATGTGATTGTATGAGAATATTTTAACATCTCTCTCAGGAATAAAGCAAGAGATAGAGAAAGCCAGAGAGAACCTTGACTTGAAGGATGTAGATTATGAAGCCACCATGGCTGCAAAACTAGCAATTGCTAAGAAGATTTTCTACTTAGAGAAAGATGAAGTGCTTAATTCAGATGCTTTCCAGAAGTTCTTCCAGGAGAATAAGGCCTGGCTGGAACCGTAT

Fln Alignment:

AllPine_a_c21385___IKQEIEKARENLDLKDVDYEATMAAKLAIAKKIFYLEKDEVLNSDAFQKFFQENKAWLEPY
Q8RXD9_______________IKEEIQKAKNQLDKNDVDYEATMETKLSIAKKIFDIEKDQTLNSSTFQKFFSENEGWLKPY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain