SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99151

Length: 1102 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene99151

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase QUASIMODO1, putative n=1 Tax=Ricinus communis RepID=B9SGW0_RICCO	-	-	0.0	76%
FL-Next	sp=Probable galacturonosyltransferase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Sma3	Glycosyltransferase QUASIMODO1, putative	-	-	2.792e-31	-

Source	Gene names
Sma3	AT4g38270; At1g06780; At1g18580; At1g18580/F25I16.8; At2g20807; At2g20810; At2g30575; At2g46480; At3g01040; At3g02350; At3g25140; At3g58790; At3g61130; At4g38270; At5g15470; At5g15470/T20K14_80; At5g47780; At5g54690; B1142B04.29; F11A12.4; F11A12_103; F22

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-
Sma3	homogalacturonan biosynthetic process	GO:0010289	Biological Process	-
Sma3	glucuronoxylan biosynthetic process	GO:0010417	Biological Process	-
Sma3	xylan biosynthetic process	GO:0045492	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G47780.1	GAUT4 galacturonosyltransferase 4 chr5:19347991-19350517 FORWARD LENGTH=616	72%
RefSeq	Arabidopsis thaliana	NP_568688.1	alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002329942.1	glycosyltransferase, CAZy family GT8 [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q93ZX7

Fln msg: your sequence is shorter than subject: 256 - 616

Fln protein: GKATIQVQTIDDFTWLNSSYSPVLRQLGSASIKDYYFRSHRMNADSNLKYRNPKYLSILNHLRFYLPQIFPELDKVLFLDDDIVVQRDLTELWNIDMQGRVNGAVETCGESFHRFDKYLNFSNALIAKNFDPNACGWAYGMNIFDLEEWRKQGITGIYHQWQNLNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMKPWLDIAIPKYRHYWTKYVKYDHIFLQLCNISG*

Protein Length: 257

Fln nts: AGGGAAAGCAACAATTCAGGTTCAGACCATTGATGACTTTACATGGCTAAATTCTAGTTATAGCCCAGTTTTGAGACAGCTTGGCTCTGCATCTATAAAGGATTATTACTTTAGGTCACATCGTATGAATGCAGACTCCAATTTGAAGTATCGGAATCCAAAGTATCTGTCTATCCTTAACCATCTTCGCTTCTACCTCCCTCAGATCTTTCCAGAGCTCGATAAAGTCCTCTTCCTGGATGATGATATTGTGGTGCAAAGGGATTTGACCGAGCTTTGGAATATCGATATGCAAGGGCGGGTAAATGGTGCAGTGGAAACCTGTGGAGAAAGCTTTCATAGGTTTGACAAATATCTCAATTTTTCCAACGCACTCATTGCAAAGAACTTTGATCCAAATGCTTGTGGATGGGCATATGGAATGAATATATTTGATCTGGAAGAATGGAGGAAACAGGGAATAACAGGGATTTACCATCAATGGCAAAATCTAAACAAAGATAGACAGTTATGGAAGTTGGGTACCCTGCCTCCTGGGCTGATCACTTTCTATCACCTGACATTCGTCTTGGATAAATCTTGGCATGTTCTGGGTCTTGGTTATAACCCTAATGTTGATTCAACTGAAATTGAAAGAGCAGCAGTGATACATTACAACGGCAATATGAAACCATGGCTCGATATAGCCATCCCTAAGTACAGACATTACTGGACTAAGTACGTGAAATATGATCACATATTCTTGCAGCTATGCAATATCAGTGGGTAG___ATTTACTAGAAGATTGTTTATTATTCCATGAACTTGCACCAAGGAACCTGTGCAGCGCCCTTTGTTGGCTGCCACAAGAATTGTGGAGGCTTAACCTATAATGGTAAAACCTGAGAGGACATTCAGATGTTAAACTGGGCAGGCTGCGAGTGGAATGTCTTCCTAACTGCAGTTTGTTACACATAAAAATGTGGCAATCTTGGAAATGTATAGTTATTTTCTGCGGACATTGCTGCAATCTTGTGTGCATATATTAGACATTTAAGTTCTTCATTCCAACGCCTAATTTAGGCAATTTTTTAACCAATATATTCAATCTTCTTCTTATTGTCC

Fln Alignment:

AllPine_a_c21216___GKATIQVQTIDDFTWLNSSYSPVLRQLGSASIKDYYFRSHRMNADSNLKYRNPKYLSILNHLRFYLPQIFPELDKVLFLDDDIVVQRDLTELWNIDMQGRVNGAVETCGESFHRFDKYLNFSNALIAKNFDPNACGWAYGMNIFDLEEWRKQGITGIYHQWQNLNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMKPWLDIAIPKYRHYWTKYVKYDHIFLQLCNIS
Q93ZX7_______________GKATIQVQNVEEFTWLNSSYSPVLKQLSSRSMIDYYFRAHHTNSDTNLKFRNPKYLSILNHLRFYLPEIFPKLSKVLFLDDDIVVQKDLSGLWSVDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPRACGWAYGMNVFDLDEWKRQNITEVYHRWQDLNQDRELWKLGTLPPGLITFWRRTYPLDRKWHILGLGYNPSVNQRDIERAAVIHYNGNLKPWLEIGIPRYRGFWSKHVDYEHVYLRECNIN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
987	87			12	0.999964
1043		11		88	0.923564
1054	62		37		1.0
1103	16			83	0.994513

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain