SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99105

Length: 529 nt

UniGene Fasta

>sp_v3.0_unigene99105
ATGGGAACCGTGGAAGAACGGATGCAACAGGTGCAGGCGCGCAAGCAGCGTATCGTGGCAGGAGCTCTGACTGATGGAGAGGTCCGCAGTGCTCGGATTGAGGAACTCAAAATGCTCTTCAGATAAACCACCTTTTGGTTGTTGGACTTTCTCATCTTTCACCATTAATCCCGGTGCTTAGGATAAGAAGCCACAAACATTCTTTTCGACTTGGGAAAACAGGTTAAATTCGTCTGGGCATTCATTTGAGAAATTTACGTGGAATTCTCAAGAGTATTTTTGTTGTATATGGGGGAACGGGTTAAATTCGCATGGGTAATCATTTGAGATTTTTACAGAATTCTCAAAATATTTTTGTAATTTAAATGGTGAACGATGGGATAGGTGGTCCTCCACAGCTGAGTTGGGTGCACTGAGCTGTTCGGGATGCCGTGAAATTGTATCCCCATTTATGTATATTGTAACATGAAGTCTGAGACTTGTACCGCTGTGAACATTAGCGAAGGTTTTATCATAATAGCAATATTTA

Ace file of the UniGene sp_v3.0_unigene99105

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2 domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MP52_ARALL	-	-	6.0e-11	89%
FL-Next	sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	89%
Sma3	DNA repair helicase rad5,16, putative	-	-	2.435e-07	-

Source	Gene names
Sma3	At5g22750; At5g43530; CHR1526; CHR903; CHR942; GSVIVT00020178001; GSVIVT00022099001; K9D7.2; MDJ22.17; OSJNBa0096F01.3; Os02g0527100; Os04g0177300; OsI_07472; OsI_15041; OsJ_06974; OsJ_13993; P0458B05.20; PHYPADRAFT_105578; POPTRDRAFT_264778; POPTRDRAFT_2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	HIP116, Rad5p N-terminal	IPR014905	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G43530.1	Helicase protein with RING/U-box domain chr5:17489327-17494830 FORWARD LENGTH=1277	5.0e-14	89%
RefSeq	Arabidopsis thaliana	NP_199166.1	Helicase protein with RING/U-box domain [Arabidopsis thaliana]	6.0e-14	89%
RefSeq	Populus trichocarpa	XP_002329602.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	4.0e-14	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9FIY7

Fln msg: your sequence is shorter than subject: 42 - 1277

Fln protein: MGTVEERMQQVQARKQRIVAGALTDGEVRSARIEELKMLFR*

Protein Length: 43

Fln nts: ATGGGAACCGTGGAAGAACGGATGCAACAGGTGCAGGCGCGCAAGCAGCGTATCGTGGCAGGAGCTCTGACTGATGGAGAGGTCCGCAGTGCTCGGATTGAGGAACTCAAAATGCTCTTCAGATAA___ACCACCTTTTGGTTGTTGGACTTTCTCATCTTTCACCATTAATCCCGGTGCTTAGGATAAGAAGCCACAAACATTCTTTTCGACTTGGGAAAACAGGTTAAATTCGTCTGGGCATTCATTTGAGAAATTTACGTGGAATTCTCAAGAGTATTTTTGTTGTATATGGGGGAACGGGTTAAATTCGCATGGGTAATCATTTGAGATTTTTACAGAATTCTCAAAATATTTTTGTAATTTAAATGGTGAACGATGGGATAGGTGGTCCTCCACAGCTGAGTTGGGTGCACTGAGCTGTTCGGGATGCCGTGAAATTGTATCCCCATTTATGTATATTGTAACATGAAGTCTGAGACTTGTACCGCTGTGAACATTAGCGAAGGTTTTATCATAATAGCAATATTTA

Fln Alignment:

AllPine_a_c21082___TVEERMQQVQARKQRIVAGALTDGEVRSARIEELKMLFR
Q9FIY7_______________TVEERMQQVQARKQRMIAGALTDEEVRSARLEELKMLFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain