SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98773

Length: 602 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene98773 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase n=1 Tax=Pinus sylvestris RepID=Q9FEU2_PINSY	-	-	3.00004e-41	55%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	36%
Sma3	Putative receptor protein kinase	-	-	9.394e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.811e-09	-
Sma3		EC:2.7.11.3-	-	1.754e-06	-

Source	Gene names
Sma3	AT1G34110; AT4G26540; AT5G48940; At1g17230; At1g17230/F20D23_7; At3g19700; At3g24240; At5g56040; CLL1A; CLL1B; ERL1c; F12G12.7; F20D23.7; FLS2; GSVIVT00001242001; GSVIVT00002006001; GSVIVT00007369001; GSVIVT00014274001; GSVIVT00016022001; GSVIVT0001714800

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48940.1	Leucine-rich repeat transmembrane protein kinase family protein chr5:19839785-19843744 FORWARD LENGTH=1135	7.0e-37	50%
RefSeq	Arabidopsis thaliana	NP_199705.2	LRR receptor-like serine/threonine-protein kinase RCH1 [Arabidopsis thaliana]	9.0e-37	50%
RefSeq	Populus trichocarpa	XP_002304699.1	predicted protein [Populus trichocarpa]	1.0e-39	54%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	Probability
361	60	40		1.0
365		60	40	1.0
373	60	40		1.0
379	40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain