SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98715

Length: 1406 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene98715

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L10 n=2 Tax=Pinaceae RepID=RL10_PINTA	-	-	2.0e-33	93%
FL-Next	sp=60S ribosomal protein L10; Pinus taeda (Loblolly pine).	-	-	0.0	93%
Sma3	60S ribosomal protein L10	-	-	9.956e-17	-

Source	Gene names
Sma3	ACI29; AT1G66580; At1g14320; At1g26910; At1g66580; CLMT2; F14L17.9; GSVIVT00006249001; GSVIVT00021317001; GSVIVT00023920001; LOC_Os03g21470; LP20; MET; MICPUCDRAFT_24102; MICPUN_93045; MT; MT2; MTI; MTL; MWMT2A; OSTLU_30754; Os03g0332500; OsI_00402; OsI_0

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Metallothionein, family 15, plant	IPR000347	-	-
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G26910.1	RPL10B Ribosomal protein L16p/L10e family protein chr1:9321709-9322813 FORWARD LENGTH=221	1.0e-26	79%
RefSeq	Arabidopsis thaliana	NP_174013.1	60S ribosomal protein L10-2 [Arabidopsis thaliana]	1.0e-26	79%
RefSeq	Populus trichocarpa	XP_002326063.1	predicted protein [Populus trichocarpa]	8.0e-29	79%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: O22431

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 88 - 228

Fln protein: MKSTVLRIIYFMLAKFKFPGRQKIIVSRKWGFTKYTRADYLKWKSENRIVPDGVNAKLLGCRGPLSNRKPGQAFLKPAVMLSSDLVA*

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTATGGGGATCTCATTCCTGTTGGATTTTGCTTCTGTGAGGGTTTTAGAGTTTCTCTGTCCTCTATTTACTTCTTAGATCTTTGTTTGGTGAGACTTCGACTCTTTCTGCTCCGCAAAAATGTCGTGCTGTGGAGGAAACTGTGGGTGTGGCTCAAGCTGCGGGTGCGGCAGTGGCTGCAAGGAATGCAAAAGAACCGTCGACCTTTCTTTTAGTGAGAAACCAGTGGAGGCGCCCCGATTTGCAGCCACGGCTTTTGACATGGGGTGCGGAAGAACCCTCTCCTTTTCTTTTAGTGAGAAGACAGTGGAGGCGCCCCTATTTGCAGCCACGACTTCTGACATAGGGTGCGGAAGAGCCCTCTACTTTTCTTTTAGTGAGAAGACAATGGAGGTGCCCATATCTGTAGCCACGGCTTCTGACATGGGGTGCAAAAGAACCTGCGACGTTTATTTTAGTGAGAGGAAATTGGAGGCGTCCCCATTTGCATCCACGGCTTCTGACATGGGGTATTTTGAGGGTTCTGCTACTGTTTCGGGAGAGAGTGGGCCATCCACGGCTTCTGACATGGGGTATTTTGAGGGTTCTGCTACTGTTTCGGGAGAGAGTGGGTGCTGCGCTTCTGGTGGTTGCAAGTGTGGATCCAACTGTACCTGCGACCCTTGCAATTGCAAATGAGTAATAATATATATATGTTATAGAGAAGACCGTCTAGGTATGGTTGGATGGCTTGTATTTGGCCTTAAAAGCCGACGTCTTCATATAAAATAGAAAGTTGTTTGTAATAAGCCATGGCCCTGTTCTCTCTGCGCCAGAGGTGCGGGAGTTGTTGAAGTCGCCCGTTTCAAGGATAAATAGAAAGTTGTTTGTAATAAGGCATGGCCCTGCTCTCTCTGCGTAAGAGGTGCCGGAGCTG_-_ATGAAGTCAACAGTTTTAAGGATAATATATTTCATGCTTGCCAAGTTCAAGTTCCCTGGTAGACAGAAAATTATCGTGAGCAGAAAATGGGGTTTCACCAAGTACACCAGAGCTGACTACTTGAAGTGGAAGTCAGAAAACAGAATTGTTCCTGATGGTGTGAATGCCAAGTTGCTTGGTTGCCGAGGTCCATTATCCAATCGAAAACCTGGGCAGGCATTTCTGAAGCCTGCCGTTATGTTGTCATCTGATCTAGTTGCTTAGATTAGTGCTTTAGTATGGTTGATAAACAGAGAACCTAAAAAGTTTGGCCTTAGTACATTAAGGCATCGATTGGGTCAATCCACAATTTTTTGATGACTGCTTATTTTTATTAAGATATTTGTGAACATGTTTATCATATCGTTCCTGATATTTTTATTCATGGTTAAATTTTGGTTTTTATATAAAGAATTTATTACAGTTTACACTTAGT

Fln Alignment:

AllPine_a_c20193___AKFKFPGRQKIIVSRKWGFTKYTRADYLKWKSENRIVPDGVNAKLLGCRGPLSNRKPGQAFLKPAVMLSSDLVA
O22431_______________AKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLKPAVVLSSDLVA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
123			18	81	0.999994
301	14	85			0.993533
581		16		83	0.994512
812		92		7	0.999602
988	10			90	0.921365
992		33	66		1.0
995	25		75		0.996473
996	25			75	0.996473
1071	92		5		0.992495
1248	95		0	0	0.962851
1338		2		97	0.917783
1390			62	37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain