SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98708

Length: 843 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene98708

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein [Medicago truncatula] gb\|ACJ86188.1\| unknown [Medicago truncatula]	-	-	7.0e-21	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	GAST1 protein, putative	-	-	1.271e-13	-

Source	Gene names
Sma3	At2g14900; GSVIVT00007725001; GSVIVT00019618001; LOC_Os03g14550; MtrDRAFT_AC158501g15v2; OsJ_10147; POPTRDRAFT_549969; POPTRDRAFT_592034; POPTRDRAFT_649651; POPTRDRAFT_838545; RCOM_0810460; RCOM_1588210; SN1;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39540.1	Gibberellin-regulated family protein chr2:16500866-16501241 FORWARD LENGTH=87	2.0e-25	48%
RefSeq	Arabidopsis thaliana	NP_181486.1	gibberellin-regulated protein [Arabidopsis thaliana]	2.0e-25	48%
RefSeq	Populus trichocarpa	XP_002300251.1	predicted protein [Populus trichocarpa]	6.0e-29	56%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
22	66			33	0.997476
24		33	66		0.997464
25	33		66		0.997454
26	33		66		0.997454
27			66	33	0.997453
145	33		66		0.997452
149	66		33		0.997452
150			33	66	0.997452
153		66	33		0.997452
158		33	66		0.997452
193	25			75	0.996473
195	75		25		0.996473
196	75		25		0.996473
197			25	75	0.996473
255		75		25	0.996473
378	75		25		0.996481
389	33			66	0.997452
543		16	83		0.994512
545	83			16	0.994512
546		16	83		0.994512
548	83			16	0.994512
552		16	83		0.994512
553	83	16			0.994512
557		83	16		0.994512
558	60	20	20		0.99255
559	83			16	0.994512
562			83	16	0.994512
566		16	83		0.994512
568		16	83		0.994512
569	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain