SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98697

Length: 1069 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene98697 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S2C2_PHYPA	-	-	0.0	76%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Serine/threonine protein phosphatase	-	-	9.209e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	3.196e-34	-

Source	Gene names
Sma3	AT1G08420; At1g03445; At1g03450; At1g08420; At2g27210; At4g03080; BSL1; BSL2; BSL3; BSU1; CHLREDRAFT_101543; F21B7.7; GSVIVT00002635001; GSVIVT00007485001; GSVIVT00023616001; LOC_Os03g44500; LOC_Os05g05240; LOC_Os12g42310; M408G1.2f; MICPUCDRAFT_32951; MI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	regulation of protein localization	GO:0032880	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27210.1	BSL3 BRI1 suppressor 1 (BSU1)-like 3 chr2:11630188-11636182 FORWARD LENGTH=1006	90%
RefSeq	Arabidopsis thaliana	NP_001189614.1	serine/threonine-protein phosphatase BSL3 [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002313501.1	predicted protein, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
965		11	88		0.991528
966		11		88	0.991528
967		11	88		0.991528
972	11	88			0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain