SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98662

Length: 1862 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene98662

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Vitis vinifera RepID=A5BGC9_VITVI	-	-	0.0	83%
FL-Next	sp=6-phosphogluconate dehydrogenase, decarboxylating; Pinus sylvestris (Scots pine).	-	-	0.0	76%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphogluconate dehydrogenase (decarboxylating).	EC:1.1.1.44	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose phosphate pathway	00030	%
Sma3	Glutathione metabolism	00480	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	VITISV_008240;

Source	GOs	Term	Type	Identity
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	phosphogluconate dehydrogenase (decarboxylating) activity	GO:0004616	Molecular Function	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR006183	-	-
Sma3	6-phosphogluconate dehydrogenase, C-terminal	IPR006114	-	-
Sma3	6-phosphogluconate dehydrogenase, decarboxylating	IPR006113	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G64190.1	6-phosphogluconate dehydrogenase family protein chr1:23825549-23827012 REVERSE LENGTH=487	81%
RefSeq	Arabidopsis thaliana	NP_176601.1	6-phosphogluconate dehydrogenase [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002304540.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E3V1I6

Fln msg:

Fln protein: MEGAVLSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSRVDETLERARDEGNLPLKGFYEPKDFVLSIQKPRAVVILVKAGAPVDQTISTLSEYMEPGDCIVDGGNEWYENTERRAKQVAEKGLLYLGMGVSGGEEGARNGPSLMPGGTLEAYRYIEDVVTKVAAQVDDGPCVTYVGAGGAGNFVKMVHNGIEYGDMQLISEAYDVLRYVGGLTNEELSETFAEWNRGELESFLVEITADIFTVKDEYSDEELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREAAAKIFKQAGLSDVLAGGGTVDKKQLVDDVRKALYASKICSYAQGMNLLRAKSAEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYERNPQLASLLVDPEFAREMVERQAAWRRVVNLAISAGISTPGMNTSLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKIAKQNRAGLKA*

Protein Length: 493

Fln nts: GTGATTGCTTGTTACTCCA_-_ATGGAGGGAGCAGTGCTGTCTAGGATCGGACTGGCAGGTCTGGCAGTGATGGGCCAGAACCTTGCCCTCAACGTCGCAGAAAAAGGCTTCCCAATCTCTGTCTACAATCGCACGACAAGCCGCGTCGACGAAACCCTGGAACGCGCACGGGACGAAGGCAACCTCCCACTGAAGGGCTTCTACGAGCCCAAGGACTTCGTGCTATCGATCCAGAAGCCGAGGGCAGTGGTCATCCTCGTCAAGGCCGGGGCTCCGGTCGACCAGACCATTTCGACGCTCTCGGAGTACATGGAGCCCGGCGACTGTATTGTAGACGGGGGCAACGAGTGGTACGAGAACACCGAGCGGAGGGCAAAGCAGGTGGCCGAGAAGGGCTTGCTCTACTTGGGAATGGGGGTCTCCGGAGGCGAGGAGGGAGCTCGCAACGGCCCTTCGCTCATGCCTGGTGGCACTCTCGAGGCCTACAGGTATATTGAAGACGTGGTCACCAAGGTCGCTGCCCAGGTGGACGACGGGCCCTGCGTTACTTATGTGGGAGCTGGAGGCGCCGGGAATTTTGTAAAAATGGTTCACAACGGCATCGAGTATGGAGACATGCAGTTGATCTCTGAGGCCTATGATGTGCTCAGGTATGTCGGGGGTTTGACCAATGAGGAGCTGTCGGAGACCTTTGCAGAGTGGAACAGAGGTGAGCTCGAGAGCTTTTTGGTTGAGATAACTGCAGATATTTTCACTGTGAAGGATGAGTATAGTGATGAGGAGCTTGTGGATAAGATATTGGATAAGACTGGCATGAAGGGGACAGGAAAATGGACCGTGCAGCAGGCTGCAGAGCTCTCTGTTGCAGCCCCCACTATTGCTGCCTCGCTTGATTGCAGGTATCTGAGTGGCCTGAAGGAGGAGCGTGAGGCTGCTGCGAAGATTTTCAAACAGGCTGGCCTGTCTGATGTCTTGGCTGGTGGGGGAACTGTGGACAAGAAGCAGTTGGTTGATGATGTCCGCAAGGCACTGTATGCCTCTAAGATCTGCAGCTATGCGCAGGGGATGAATCTTCTCCGTGCCAAGAGTGCGGAGAAGGGATGGAATCTGAACTTTGGGGAACTGGCCCGTATCTGGAAAGGCGGGTGCATTATCAGGGCTGTTTTCTTGGATAGAATCAAGAAGGCCTACGAACGGAACCCACAGCTTGCAAGTCTCTTGGTTGATCCAGAGTTTGCGAGAGAGATGGTTGAGAGACAGGCTGCTTGGAGAAGGGTGGTGAATTTGGCAATCAGTGCTGGCATCAGCACCCCGGGTATGAATACGAGTCTTGCCTATTTTGATACTTACCGCCGTGCCCGTTTACCTGCTAATCTTGTCCAGGCACAACGGGACCTGTTCGGTGCACATACCTATGAACGGATCGATCGCCCTGGTTCTTTCCATACAGAATGGACAAAGATTGCTAAGCAGAACAGGGCTGGGCTGAAGGCCTGA___AAGTGAATTTGTTCCCCAGGTTCAAATTATGTTTCTGCTGAACAAATTCCTATGCATGCAGCCTGAGTTCTGCCTGTCAGTTTGACATTAAGAGCCTTTTTTCAGCTTGCATGCTTCGTTTATTTCATGATTGTAGGAGAGTTGAAAATTGCGTGCCTTCCTTTTCCAGAGAATGTATCCAATAAATGGCACGGGTAGAATGTTATCAGAGATATTTTTAGGAGCAAAATTTAGCCCTTTGGCAAATTTTGCTAAATAATTTTACATGTGCCAATATTTTTCTATGCAGTTGAAAGAGCGCAACTAACAAACCTATTGGGTTTTTTTTAAATATTAGATGCAGTGTATGGGTTGTTCTTTCTGTTCT

Fln Alignment:

AllPine_a_c20067___MEGAVLSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSRVDETLERARDEGNLPLKGFYEPKDFVLSIQKPRAVVILVKAGAPVDQTISTLSEYMEPGDCIVDGGNEWYENTERRAKQVAEKGLLYLGMGVSGGEEGARNGPSLMPGGTLEAYRYIEDVVTKVAAQVDDGPCVTYVGAGGAGNFVKMVHNGIEYGDMQLISEAYDVLRYVGGLTNEELSETFAEWNRGELESFLVEITADIFTVKDEYSDEELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEEREAAAKIFKQAGLSDVLAGGGTVDKKQLVDDVRKALYASKICSYAQGMNLLRAKSAEKGWNLNFGELARIWKGGCIIRAVFLDRIKKAYERNPQLASLLVDPEFAREMVERQAAWRRVVNLAISAGISTPGMNTSLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKIAKQNR
E3V1I6_______________MASSDLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSSEKVDETVERAKVEGNLPVKGFHDPKDFVNSIQKPRVIILLVKAGLPVDKTIETLSAHMEEGDCIVDGGNEWYENTERRQEAAKQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDIVLKVAAQVDSGPCVTYIGKGGAGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELHQAFDTWNKGELCSFLIEITADIFAIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAASLDSRFLSGLKEERVEASKVFKNVDVGTV----PDLDKTKLIDDVRRALYASKICSYAQGMNLIRAKSMERGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPDLFNLLVDPEFAKEMIERQSAWRRVVTLAINAGVSVPGMSASLAYFDSYRRETLPANLVQAQRDYFGAHTYERIDMPGFFHTEWFKIAKQSK

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
476		60		40	1.0
479	10		90		0.90298
591	22		77		0.999999
638	30	70			1.0
643			75	25	1.0
645			11	88	0.923564
967		66		33	0.997452
1035			80	20	0.995493
1090		25		75	0.996473
1108	16		83		0.994512
1171	25	75			0.996473
1172		25		75	0.996473
1173	25		75		0.996473
1185	75	25			0.996473
1207	25		75		0.996473
1226		75		25	0.999294
1260			75	25	0.996473
1261	25		75		0.996473
1267	75		25		0.996473
1274	20	80			0.995493
1280			20	80	0.995493
1351	14			85	0.993533
1353			14	85	0.993533
1354			14	85	0.993533
1360		14		85	0.993533
1375			14	85	0.993533
1395	85	14			0.993533
1399	85		14		0.993533
1608		22		4	1.0
1611		80		19	1.0
1670	11		88		0.999952
1770			33	66	1.0
1771	88	11			0.991528
1784	66		22	11	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain