SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98619

Length: 1376 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene98619

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64260.1	EXL2 EXORDIUM like 2 chr5:25703980-25704897 FORWARD LENGTH=305	49%
RefSeq	Arabidopsis thaliana	NP_201231.1	protein EXORDIUM like 2 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002307366.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ56

Fln msg:

Fln protein: MACSFSWLRLSALLHIAVCIVILSAVPASGQSRKLGALVEGPSVVLTYHDGPLLSASGLTQLHVIWYGKFTPVQRSIVGDFLQSLGAVALEGTRSKPSASAWWKTTEKYVGAASNKAEPSSVIMLGKQKVDQDYSLGKSLKRADIASLVEAAVKSRSLPLPRPRPLHENKATKENAVYLVLTSEDVAVEGFCMSSCGFHDSLNVLSHQKATRNRTTGKEKEKEPRHLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPNGDMGIDGMIINIATVLAGAATNTFNNGYFQGDSAAPLEAVSACTGIYGKGAYPGFPGELLVDKMTGASYNSHGVNGRTFLLPAMWDPATRTCETLV*

Protein Length: 362

Fln nts: GACAGCAATCGGTTTTCACTTGTCGCCTATTTGTGTTTTCACCTTGTGTTTGTAACAAGCTCTCGAGGTTACTGTGGTTTGTTCCTTTGAATCCAAGGGAGCTCGCGTCTCTTTGCTGTGTGATAGATAGAGAGCGTTAAA_-_ATGGCTTGTTCTTTTTCTTGGCTTCGACTGTCTGCCTTGCTACATATAGCGGTGTGTATAGTGATATTATCTGCAGTCCCTGCTTCTGGACAGTCGAGAAAACTTGGGGCTTTGGTGGAAGGGCCATCTGTTGTCTTGACTTACCACGATGGTCCTCTGCTCTCTGCCAGTGGATTGACCCAACTCCACGTAATCTGGTATGGGAAATTCACCCCTGTTCAACGCTCCATTGTGGGGGATTTTCTTCAATCTCTTGGAGCAGTGGCGTTAGAGGGGACAAGAAGTAAACCCTCCGCGTCTGCTTGGTGGAAGACCACTGAGAAGTATGTGGGCGCAGCCTCTAACAAGGCGGAGCCTTCCAGTGTTATAATGCTAGGAAAGCAGAAGGTAGACCAAGATTATTCCCTCGGCAAGTCACTCAAGAGGGCTGACATTGCTTCTCTAGTTGAAGCTGCTGTTAAGTCGAGATCTCTGCCTCTGCCTCGGCCTCGGCCTCTACACGAGAATAAAGCGACAAAAGAAAATGCTGTATACTTGGTGCTTACCTCTGAGGATGTTGCCGTTGAGGGTTTCTGCATGAGTTCCTGCGGATTCCATGACAGTCTCAATGTATTATCACACCAGAAGGCAACAAGAAACCGAACGACGGGGAAGGAGAAGGAGAAGGAGCCTCGTCATCTTTTACCATACGCGTGGGTTGGGAACTCTGCAAGTCAGTGTCCTGGACAGTGCGCATGGCCATTTCATCAACCCATGTATGGACCCCAGACTCCCCCTTTGGTGGCACCAAACGGTGACATGGGTATCGATGGGATGATAATCAACATTGCCACCGTTCTTGCAGGAGCAGCTACTAATACATTTAACAACGGCTATTTTCAAGGGGACTCTGCTGCGCCTCTAGAGGCGGTGTCTGCCTGTACGGGAATATATGGAAAGGGGGCTTATCCTGGGTTTCCCGGTGAGCTATTAGTTGATAAAATGACGGGGGCAAGCTATAACTCCCATGGAGTTAATGGGAGAACATTTTTGTTACCAGCTATGTGGGATCCTGCTACCAGAACTTGCGAGACATTAGTATGA___ACATTTTTGTAATTTCAAGTCTGGGATTTTAAAAGGAAGCATGAACGTAGAGTTAGGTGCATAGGGTGCAGCGTTTCTGCAGATAGAATCTTAAATATGTATTCTTTATTCTTTACACAGGGTTTTTATGTTCCCTGTACCTGCATCATGTC

Fln Alignment:

AllPine_a_c19982___MACSFSWLRLSALLHIAVCIVILSAVPASGQSRKLGALVEGPSVVLTYHDGPLLSASGLTQLHVIWYGKFTPVQRSIVGDFLQSLGAVALEGTRSK-PSASAWWKTTEKYVGAASNKAEPS------SVIMLGKQKVDQDYSLGKSLKRADIASLVEAAVKXXXXXXXXXXXXHENKATKENAVYLVLTSEDVAVEGFCMSSCGFHDSLNVLSHQKATRNRTTGKEKEKEPRHLLPYAWVGNSASQCPGQCAWPFHQPMYGPQTPPLVAPXXXXXXXXXXXXXATVLAGAATNTFNNGYFQGDSAAPLEAVSACTGIYGKGAYPGFPGELLVDKMTGASYNSHGVNGRTFLLPAMWDPATRTCETLV
B8LQ56_______________MAGYVSWPRLTAMLQMVVCMAILCSSPAAGHLRKLAALVEEPSVVLTYHDGPLLSTSGVIPVHLIWYGKFTPVQRTIVGDFLQSLGAKTLEGTNAKLPSASTWWKTTEKYEGAASNKAAPSNKAAPSSVIMLGKQKVDQDYSLGNSLKRSDIAALVQAAVKSGAVPLP------KSNAGNANAVYLVLTSEDVTVEGFCMSSCGFHGSLNLLPHQQSTKSRMMGKEEKHQ--QLLPYAWVGNSASQCPGQCAWPFHQPIYGPQTPPLVAPNGDMGIDGMIINIATVLAGAATNPFNSGYFQGDAAAPLEAVSACPGIYGKGSYPGFPGELLVDKTTGASYNAHGVNGRQFLLPAMWDPATKSCQALV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
64		16		83	0.994523
91	83		16		0.994523
247	83		16		0.994512
767		12		87	0.992554
770		85		14	0.993533
791	66		33		0.997452
869	33	66			0.997452
972		9		90	0.999872
993	9	90			0.999872
1104		15	84		0.999986

SSRs (tot: 1)

Start position	End position	Sequence	Length
792	810	GAAGGA GAAGGA GAAGGA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain