SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98528

Length: 466 nt

UniGene Fasta

>sp_v3.0_unigene98528
TGTCACAGCCTTAGGAACGTATGATCTTATCATAGGTATGGATTGGTTGGAAGCTCACCAAGCATGGATAGACTGTTATGGGAAAAGAATTCTGGGCATAAATGATGAGGGAGAAGTAATCCAAATTCAAGGAATCAGGAGGGAAGTTTCTTTACGCTACATCTCAGCAATGCAGGTGAAGCGTTGTTTAAGAAAAGGTTGTCAGGCTTATGCAATTCACGAAGTAAGCCAAGAAAAGTGCCATCCTTAGAACAATATCCGGTGTTAGCCGAGTTCCCGGATGTATTTCCGAAGGAACTACCTGGATTACCCCCGGTAAGAGAATTGGATCTCACTATTGAATTAAAGCCAGGTACCCAACCGATCTCTAAAGCGCCTTATAGAATGACAGCTCCGGAACTTCAGGAATTGCAAATCCAGTTGAAGGAACTACTCGATACAGGGCTTATCCGGACCCAGTACCTCA

Ace file of the UniGene sp_v3.0_unigene98528

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU	-	-	8.0e-21	47%
FL-Next	tr=Retrotransposon protein; Beta vulgaris (Sugar beet).	-	-	0.0	33%

Source	Gene names
Sma3	AT4g10580; At2g04670; At2g14650; LOC_Os11g06920; OSJNBa0095C12.12; SDM1_27t00008; SDM1_41t00011; SDM1_42t00005; T4F9.40; VITISV_000582; VITISV_006047; VITISV_016361; VITISV_025868; VITISV_027150;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A2I5E5

Fln msg: Separated hits, possible frame ERROR between 235 and 247, Distance to subject end: 907 aas, your sequence is shorter than subject: 155 - 1501

Fln protein: VTALGTYDLIIGMDWLEAHQAWIDCYGKRILGINDEGEVIQIQGIRREVSLRYISAMQVKRCLRKGCQAYAIHEVSQxxxxxLEQYPVLAEFPDVFPKELPGLPPVRELDLTIELKPGTQPISKAPYRMTAPELQELQIQLKELLDTGLIRTQYL

Protein Length: 156

Fln nts: TGTCACAGCCTTAGGAACGTATGATCTTATCATAGGTATGGATTGGTTGGAAGCTCACCAAGCATGGATAGACTGTTATGGGAAAAGAATTCTGGGCATAAATGATGAGGGAGAAGTAATCCAAATTCAAGGAATCAGGAGGGAAGTTTCTTTACGCTACATCTCAGCAATGCAGGTGAAGCGTTGTTTAAGAAAAGGTTGTCAGGCTTATGCAATTCACGAAGTAAGCCAAGAxxxxxxxxxxxxCTTAGAACAATATCCGGTGTTAGCCGAGTTCCCGGATGTATTTCCGAAGGAACTACCTGGATTACCCCCGGTAAGAGAATTGGATCTCACTATTGAATTAAAGCCAGGTACCCAACCGATCTCTAAAGCGCCTTATAGAATGACAGCTCCGGAACTTCAGGAATTGCAAATCCAGTTGAAGGAACTACTCGATACAGGGCTTATCCGGACCCAGTACCTCA

Fln Alignment:

AllPine_a_c19807___LGTYDLIIGMDWLEAHQAWIDCYGKRILGINDEGEVIQIQGIRREVSLRYISAMQVKRCLRKGCQAY--AIHEVSQExxxxLEQYPVLAEFPDVFPKELPGLPPVRELDLTIELKPGTQPISKAPYRMTAPXXXXXXXXXXXXXDTGLIR
A2I5E5_______________LGDLDVILGMNWLSLYKARIDCEVQKVVLRNPSGKFTSYRRFGKPKNFGVISALQVQKLMRKGCELFFCSVQDVSKExxxxLEDVSIVNEFMDVFPSEISGMPPARAVEFTIDLVPGTAPISKAPYRMAPPEMSELKTQLQELLDKGYIR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
98	25		75		0.996473
99	25		75		0.996473
100		75		25	0.996473
101	75		25		0.996473
141	33		66		0.997453
143	66		33		0.997456
153		66		33	0.997452
154		33		66	0.997452
166		66		33	0.997452
178	33		66		0.997453
185		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain