SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98526

Length: 456 nt

UniGene Fasta

>sp_v3.0_unigene98526
ATGGGGCAAAGGGGTTTTGCTTGAAGCTGCACCAAACGAGGTCTTCTATTCATTTCACAAAGATGAGATATCAGCTGCCTCATTGCTTCATCCATGTAAAGTTGCATTTCTCGTGATTGGCGTTGCTCTTCCTTCAGGCATATCTTCGTTTGTGTGTAGGAGAGTTTATGACACTACGAACAGGTGTTTATGGTGGTTAACTGATCAAGACTACACTGATGGGCGTTTATTTTGGAGGAGTATTGTTGCCCTCAATGACTTGAGAATCAGCCTATGAGCAGCCTCTGATGGTCAAAAGTTCAAATGTGTCTATGATGCAGTGCAAGTATAGAACACTTCCAAAGTTATTTGGACTCAAGGATCGAGGTTTCACAAAGAGGATTAACTTGATGAATATTTTGATATTCATATTATTGACAAAAGACGTTACAATTAGAATCATATCTATTGATGCCG

Ace file of the UniGene sp_v3.0_unigene98526

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BAH and TFIIS domain-containing protein [Arabidopsis thaliana] emb\|CAB41133.1\| putative protein [Arabidopsis thaliana] gb\|AEE78362.1\| BAH and TFIIS domain-containing protein [Arabidopsis thaliana]	-	-	9.0e-29	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Gene names
Sma3	At3g48050; At3g48060; GSVIVT00016144001; GSVIVT00020789001; LES1_20t00009; Os02g0742000; OsI_08894; OsI_08895; OsJ_08340; OsJ_08341; P0516G10.37-1; P0585G03.15-1; PHYPADRAFT_161278; PHYPADRAFT_234454; POPTRDRAFT_661970; POPTRDRAFT_661971; POPTRDRAFT_66643

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3		GO:0006350	Biological Process	-
Sma3	transcription elongation, DNA-dependent	GO:0006354	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	IPR003617	-	-
Sma3		IPR004253	-	-
Sma3		IPR010990	-	-
Sma3		IPR014754	-	-
Sma3		IPR014765	-	-
Sma3	Transcription factor IIS, N-terminal	IPR017923	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48060.1	" BAH domain ;TFIIS helical bundle-like domain chr3:17743234-17748372 REVERSE LENGTH=1611"	4.0e-34	81%
RefSeq	Arabidopsis thaliana	NP_190389.1	BAH and TFIIS domain-containing protein [Arabidopsis thaliana]	6.0e-34	81%
RefSeq	Populus trichocarpa	XP_002321573.1	predicted protein, partial [Populus trichocarpa]	2.0e-35	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1G4

Fln msg: your sequence is shorter than subject: 92 - 152

Fln protein: WGKGVLLEAAPNEVFYSFHKDEISAASLLHPCKVAFLVIGVALPSGISSFVCRRVYDTTNRCLWWLTDQDYTDGRLFWRSIVALNDLRISL*

Protein Length: 93

Fln nts: ATGGGGCAAAGGGGTTTTGCTTGAAGCTGCACCAAACGAGGTCTTCTATTCATTTCACAAAGATGAGATATCAGCTGCCTCATTGCTTCATCCATGTAAAGTTGCATTTCTCGTGATTGGCGTTGCTCTTCCTTCAGGCATATCTTCGTTTGTGTGTAGGAGAGTTTATGACACTACGAACAGGTGTTTATGGTGGTTAACTGATCAAGACTACACTGATGGGCGTTTATTTTGGAGGAGTATTGTTGCCCTCAATGACTTGAGAATCAGCCTATGA___GCAGCCTCTGATGGTCAAAAGTTCAAATGTGTCTATGATGCAGTGCAAGTATAGAACACTTCCAAAGTTATTTGGACTCAAGGATCGAGGTTTCACAAAGAGGATTAACTTGATGAATATTTTGATATTCATATTATTGACAAAAGACGTTACAATTAGAATCATATCTATTGATGCCG

Fln Alignment:

AllPine_a_c19802___GKGVLLEAAP-NEVFYSFHKDEISAASLLHPCKVAFLVIGVALPSGISSFVCRRVYDTTNRCLWWLTDQDYTD
A9P1G4_______________GKGASIEALPPNEVFYSFHQDEISGASLLHPCKIAFLSKGVQLPSGVSAFVCRRVYDVTSKCLWWLTDRDYTN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
402		33		66	0.997476
403	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain