SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98515

Length: 470 nt

UniGene Fasta

>sp_v3.0_unigene98515
ATGGGCAACGTTCCGGTCAATGGGGGCTGCCATAAGATTCGTAGCCGATAATCCTGGGGCTTGGGTGATGCACTGCCACTTGGACGTGCACATAACATGGGGTTTGGCCATGGTTTTGTGGTGAGCAATGGACCTAGCTCTCTTTTGAGTATCGAGTCGCCCCCTGTAGATCTTCCGCAGTGCTGAGCACAAATACTCTGGATACCTATGACAGATCGACTATATAGATAGAGAGGGCATCGCTATTATATGGATAAGATGGCTGTAAAATTCCTCTCCATACTCCATATATGGATCAGACTCAATCATATTGTTAGATTAAAGTGAACCTATTGATGGAACGATTTCCTTTAGATCCACAAACGTTCCATTCTGTGTTGATATGCTGCCATACTCGATAGTTATTTTGATTGTAAGATCAATTTTGATCGCCCTTTGTTTCATCGTGCGTTACACCAGCGCAATTTTGG

Ace file of the UniGene sp_v3.0_unigene98515

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	1.0e-19	100%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	100%
Sma3	Laccase, putative	-	-	2.243e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	2.042e-26	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	6.549e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		6.549e-12	%
Sma3	Metabolic pathways	01100		6.549e-12	%

Source	Gene names
Sma3	At2g30210; At2g40370; At5g01190; At5g05390; At5g07130; B1088C09.5; F7J8.170; GLac90; GSVIVT00008641001; GSVIVT00024008001; GSVIVT00029368001; K18I23.20; LAC1; LAC10; LAC11; LAC12; LAC13; LAC17; LAC2; LAC23; LAC25; LAC3; LAC5; LAC90a; LAC90b; LAC90c; LAC90

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07130.1	LAC13 laccase 13 chr5:2210567-2212525 FORWARD LENGTH=569	8.0e-15	82%
RefSeq	Arabidopsis thaliana	NP_196330.3	laccase 13 [Arabidopsis thaliana]	1.0e-14	82%
RefSeq	Populus trichocarpa	XP_002315130.1	laccase 90d, partial [Populus trichocarpa]	3.0e-15	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9AUI3

Fln msg: Overlapping hits, possible frame ERROR between 115 and 100, your sequence is shorter than subject: 62 - 570

Fln protein: WATFRSMGAAIRFVADNPGAWVMHCHLDVHITxxxxxxxVVSNGPSSLLSIESPPVDLPQC*

Protein Length: 63

Fln nts: ATGGGCAACGTTCCGGTCAATGGGGGCTGCCATAAGATTCGTAGCCGATAATCCTGGGGCTTGGGTGATGCACTGCCACTTGGACGTGCACATAACAxxxxxxxxxxxxxxxxxxxxxGTGGTGAGCAATGGACCTAGCTCTCTTTTGAGTATCGAGTCGCCCCCTGTAGATCTTCCGCAGTGCTGAGCACAAATACTCTGGATACCTATGACAGATCGACTATATAGATAGAGAGGGCATCGCTATTATATGGATAAGATGGCTGTAAAATTCCTCTCCATACTCCATATATGGATCAGACTCAATCATATTGTTAGATTAAAGTGAACCTATTGATGGAACGATTTCCTTTAGATCCACAAACGTTCCATTCTGTGTTGATATGCTGCCATACTCGATAGTTATTTTGATTGTAAGATCAATTTTGATCGCCCTTTGTTTCATCGTGCGTTACACCAGCGCAATTTTGG

Fln Alignment:

AllPine_a_c19779___AAIRFVADNPGAWVMHCHLDVHITWxxxxxFVVSNGPSSLLSIESPPVDLPQC
Q9AUI3_______________AAIRFVADNPGAWVMHCHLDVHITWxxxxxFVVSNGPSSLLSIESPPLDLPQC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
137		80		20	0.995493
243	25	75			0.996473
259	75		25		0.996476
272	66		33		0.997452
337	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain