SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98497

Length: 309 nt

UniGene Fasta

>sp_v3.0_unigene98497
CGTCGTGACCTTGGCTGTCACTCATCTTAGTGTTGGGCCAACATTTCTCATTATGAAGTTTATTGAGAGTATTCTTGCCATTATGATGATGTATGGAGCCTATGCAGCAACCCGTAGTGTAGCTGTTTCAAGGATATTTCTTCGTTTTCTATTGTTTGGAGTTCTTTCGGTGTCTATGTCTTATTTTATGTGAAGGCACTTCAACAACCGGGTGAAAGTTCTATATATTTTAGGATATATATTTTTGTTGTCGGAGTGTATGCTGTTATCCAGTTTTTTAAGTTTTACCTTTACTTGCGAATTACCTTC

Ace file of the UniGene sp_v3.0_unigene98497

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Callose synthase 9 n=4 Tax=Arabidopsis thaliana RepID=CALS9_ARATH	-	-	8.0e-17	64%
FL-Next	sp=Callose synthase 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%

Source	Gene names
Sma3	At3g07160; CALS9; CFL1; GSL10; T1B9.18;

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-
Sma3	callose deposition in cell wall	GO:0052543	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G07160.1	ATGSL10, gsl10, CALS9 glucan synthase-like 10 chr3:2265142-2279383 REVERSE LENGTH=1890	3.0e-19	64%
RefSeq	Arabidopsis thaliana	NP_187372.5	callose synthase [Arabidopsis thaliana]	4.0e-19	64%
RefSeq	Populus trichocarpa	XP_002322219.1	predicted protein [Populus trichocarpa]	1.0e-14	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SFU6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1271 aas, your sequence is shorter than subject: 64 - 1890

Fln protein: VVTLAVTHLSVGPTFLIMKFIESILAIMMMYGAYAATRSVAVSRIFLRFLLFGVLSVSMSYFM*

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTAGTGTTGGGCCAACATTTCTCATTATGAAGTTTATTGAGAGTATTCTTGCCATTATGATGATGTATGGAGCCTATGCAGCAACCCGTAGTGTAGCTGTTTCAAGGATATTTCTTCGTTTTCTATTGTTTGGAGTTCTTTCGGTGTCTATGTCTTATTTTATGTGAAGGCACTTCAACAACCGGGTGAAAGTTCTATATATTTTAGGATATATATTTTTGTTGTCGGAGTGTATGCTGTTATCCAGTTTTTTAAGTTTTACCTTTACTTGCGAATTACCTTC

Fln Alignment:

AllPine_a_c19729___LSVGPTFLIMKFIESILAIMMMYGAYAATRSVAVSRIFLRFLLFGVLSVSMSY
Q9SFU6_______________LSLGPTFVVMKFSESVLEVIMMYGAYSTTRRLAVSRIFLRFIWFGLASVFISF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain