SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98383

Length: 308 nt

UniGene Fasta

>sp_v3.0_unigene98383
ATGGGCTTTGCAATTGCTGCTGTTGTTAAAGCGAGAGCATTGAAAAAGGCAAACACTTTAAGGAAATGGTAGCTGAATGCATTCCAGAGAGTGGATTTTTCCTCTGACGATGTGCTGAATAGCTTGAAGGAAGAAAACATTATAGGCAAAGGAGAAGTCTATAATCTCTGGGCAACTGTTAGCCACTCACCAGAGTCAAAATGGGCCACAATTACTTGAATGGATCCATCCCAAAAGGGCTGCTAAACCTTCTGAGGTTGGAGATGTTTTAACTCCATGTCAACTATCTAAATGGTAGCATTCCGGCT

Ace file of the UniGene sp_v3.0_unigene98383

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich receptor-like protein kinase BAM1 [Arabidopsis thaliana] ref\|NP_001190624.1\| leucine-rich receptor-like protein kinase BAM1 [Arabidopsis thaliana] sp\|O49545.1\|BAME1_ARATH RecName: Full=Leucine-rich repeat receptor-like serine/threonine-protei	-	-	2.0e-05	74%
FL-Next	sp=Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%
Sma3	Receptor protein kinase like protein	-	-	1.489e-07	-

Source	Gene names
Sma3	AT3G49670; AT5G65700; At3g49670; At5g65700; F6H11.170; LOC_Os03g12730; LOC_Os03g56270; LRK1; LRR-RLK; OJ1118_D07.29; OJ1203D03.4; OSJNBb0094O03.15; Os03g0228800; Os03g0773700; Os07g0134200; OsI_10619; OsI_13698; OsI_24796; OsJ_10012; OsJ_12761; OsJ_22997;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O49545

Fln msg: Separated hits, possible frame ERROR between 153 and 165, Unexpected STOP codon at 3' end. Distance to subject end: 554 aas, your sequence is shorter than subject: 91 - 1003

Fln protein: MGFAIAAVVKARALKKANTLRKW*LNAFQRVDFSSDDVLNSLKEENIIGKxxxxxSLGNC*PLTRVKMGHNYLNGSIPKGLLNLLRLEMF*

Protein Length: 92

Fln nts: ATGGGCTTTGCAATTGCTGCTGTTGTTAAAGCGAGAGCATTGAAAAAGGCAAACACTTTAAGGAAATGGTAGCTGAATGCATTCCAGAGAGTGGATTTTTCCTCTGACGATGTGCTGAATAGCTTGAAGGAAGAAAACATTATAGGCAAAGGxxxxxxxxxxxxATCTCTGGGCAACTGTTAGCCACTCACCAGAGTCAAAATGGGCCACAATTACTTGAATGGATCCATCCCAAAAGGGCTGCTAAACCTTCTGAGGTTGGAGATGTTTTAACTCCATGTCAACTATCTAAATGGTAGCATTCCGGCT

Fln Alignment:

AllPine_a_c19509___RKW*LNAFQRVDFSSDDVLNSLKEENIIGKGxxxxSLGNC*PLTRVKMGHNYLNGSIPKGXXXXXXXXXXXXHVNYLNGSIP
O49545_______________RAWRLTAFQRLDFTCDDVLDSLKEDNIIGKGxxxxSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGELP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain