SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98363

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene98363
GATGTCTTCGAGTGTTTGAAAGACGAAAATATTATTGGAAAGGGAGGAGCAGGAGTTGTGTAGAAGGGTTCGATGCGGAGCGGTGAGGTATTTGCAGTGAAGAGGTTGCCTGGGATTGGAAGAGGGTCTTCTCACGACCATGGTTTTGCTGTAGAGATTGAGACTTATATGTAAGTTCTCATACAGTATTTTCTTCTGTTA

Ace file of the UniGene sp_v3.0_unigene98363

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os03g0773700 protein (Fragment) n=4 Tax=Oryza sativa RepID=Q0DN56_ORYSJ	-	-	5.0e-09	52%
FL-Next	sp=Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Sma3	CLV1-like receptor kinase	-	-	9.072e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	3.726e-06	-

Source	Gene names
Sma3	AT1G75820; AT3G49670; AT5G65700; At1g75820; At3g49670; At5g65700; CLAVATA-1; CLAVATA1; CLL1A; CLL1B; CLV1; CLV1A; CLV1B; CM0216.560.nc; F6H11.170; GSVIVT00014390001; GSVIVT00021105001; HAR1; LOC_Os03g12730; LOC_Os03g56270; LRK1; LRR-RLK; NARK; NTS1; OJ111

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310320.1	predicted protein [Populus trichocarpa]	4.0e-11	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O49545

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 248 aas, your sequence is shorter than subject: 58 - 1003

Fln protein: DVFECLKDENIIGKGGAGVV*KGSMRSGEVFAVKRLPGIGRGSSHDHGFAVEIETYM*

Protein Length: 59

Fln nts: GATGTCTTCGAGTGTTTGAAAGACGAAAATATTATTGGAAAGGGAGGAGCAGGAGTTGTGTAGAAGGGTTCGATGCGGAGCGGTGAGGTATTTGCAGTGAAGAGGTTGCCTGGGATTGGAAGAGGGTCTTCTCACGACCATGGTTTTGCTGTAGAGATTGAGACTTATATGTAAGTTCTCATACAGTATTTTCTTCTGTTA

Fln Alignment:

AllPine_a_c19479___DVFECLKDENIIXXXXXXXXXXXSMRSGEVFAVKRLPGIGRGSSHDHGFAVEIET
O49545_______________DVLDSLKEDNIIGKGGAGIVYKGVMPNGDLVAVKRLAAMSRGSSHDHGFNAEIQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain