SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98191

Length: 454 nt

UniGene Fasta

>sp_v3.0_unigene98191
CGTCGTGACCTTGGCTGTCACTCACTCGTCTTGTCCTTGGCTGCTTTCCTCTTTTCAAATGGGTCCGCTCTTCAATCTATCTCACAGAGTCGTGTTGGCTCCGGTGACCCGATGCCGTGCACTGAACAACATACCGCAGTCGTCCCACGTGAAGTTCTATTCTCAGAGAGCAACCAAAGGCGGCCTCCTCATTACCGAAGCAAACGCTGTCTCAGCACAGGCCACCGGGTTCCCGCATTCTCCTGGAATTTTCAACGATGACCAAATCAAGGCCTGGAAAAATGTTGTAGCCGCCGTTCATGAGAAGGGTGCCATCATTTTCTGCCAGATATGGCACGTCGGGAGGGCGTCAAACACAGTTTATCAGCCCAACCATGAAGCCCCACTCTCGTCCACCAGCAACCCTATTCCAGAACAGTCGAGCATTTTGATGCCGGATGGCTCTAGGGGCACC

Ace file of the UniGene sp_v3.0_unigene98191

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	12-oxophytodienoate reductase 3 n=1 Tax=Solanum lycopersicum RepID=OPR3_SOLLC	-	-	9.94922e-44	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	12-oxo-phytodienoic acid reductase	-	-	8.016e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on the CH-CH group of donors, With NAD(+) or NADP(+) as acceptor.	EC:1.3.1.-	-	8.714e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		8.714e-09	%
Sma3	Phenylalanine metabolism	00360		8.714e-09	%
Sma3	Chlorocyclohexane and chlorobenzene degradation	00361		8.714e-09	%
Sma3	Fluorobenzoate degradation	00364		8.714e-09	%
Sma3	Tryptophan metabolism	00380		8.714e-09	%
Sma3	Xylene degradation	00622		8.714e-09	%
Sma3	Toluene degradation	00623		8.714e-09	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		8.714e-09	%
Sma3	Propanoate metabolism	00640		8.714e-09	%
Sma3	Isoflavonoid biosynthesis	00943		8.714e-09	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		8.714e-09	%
Sma3	Metabolic pathways	01100		8.714e-09	%
Sma3	12-oxophytodienoate reductase.	EC:1.3.1.42	-	5.801e-33	-

Source	KEGGs	Term	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592	5.801e-33	%
Sma3	Biosynthesis of plant hormones	01070	5.801e-33	%
Sma3	Metabolic pathways	01100	5.801e-33	%

Source	Gene names
Sma3	AT1G17990; AT2G06050; At1g09400; At1g17990; At1g18020; At1g76680; At1g76690; At2g06050; CHLREDRAFT_121264; CROYEH; DDE1; F14J9.6; F28O16.5; F28O16.6; F2H15.21; GSVIVT00002893001; GSVIVT00002894001; GSVIVT00016458001; GSVIVT00021891001; GSVIVT00021907001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G06050.2	OPR3 oxophytodienoate-reductase 3 chr2:2359240-2361971 REVERSE LENGTH=391	59%
RefSeq	Arabidopsis thaliana	NP_001077884.1	12-oxophytodienoate reductase 3 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002330484.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P127

Fln msg: Distance to subject end: 224 aas, atg_distance in limit (1-15): atg_distance = 5, your sequence is shorter than subject: 132 - 376

Fln protein: MGPLFNLSHRVVLAPVTRCRALNNIPQSSHVKFYSQRATKGGLLITEANAVSAQATGFPHSPGIFNDDQIKAWKNVVAAVHEKGAIIFCQIWHVGRASNTVYQPNHEAPLSSTSNPIPEQSSILMPDGSRGT

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCGTCTTGTCCTTGGCTGCTTTCCTCTTTTCAA_-_ATGGGTCCGCTCTTCAATCTATCTCACAGAGTCGTGTTGGCTCCGGTGACCCGATGCCGTGCACTGAACAACATACCGCAGTCGTCCCACGTGAAGTTCTATTCTCAGAGAGCAACCAAAGGCGGCCTCCTCATTACCGAAGCAAACGCTGTCTCAGCACAGGCCACCGGGTTCCCGCATTCTCCTGGAATTTTCAACGATGACCAAATCAAGGCCTGGAAAAATGTTGTAGCCGCCGTTCATGAGAAGGGTGCCATCATTTTCTGCCAGATATGGCACGTCGGGAGGGCGTCAAACACAGTTTATCAGCCCAACCATGAAGCCCCACTCTCGTCCACCAGCAACCCTATTCCAGAACAGTCGAGCATTTTGATGCCGGATGGCTCTAGGGGCACC

Fln Alignment:

AllPine_a_c19189___LLSSFQMGPLFNLSHRVVLAPVTRCRALNNIPQSSHVKFYSQRATKGGLLITEANAVSAQATGFPHSPGIFNDDQIKAWKNVVAAVHEKGAIIFCQIWHVGRASNTVYQPNHEAPLSSTSNPIPEQSSILMPDG
A9P127_______________LITPYQLGP-FSLSHRVVLAPLTRQRSYKYIPQPHAILYYSQRTSPGGLLIAEATGVSDSAQGYPNTPGIWTEEQVEAWKPIVNGVHEKGGVFFCQIWHSGRASHVDYQPNGQAPLSSTDRKISGQ--IVLPNG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
267	25		75		0.996476
269		75		25	0.996476
270		75	25		0.996476
271	75			25	0.996478
411	75			25	0.99649
413		75	25		0.99649
418		33		66	0.997454
419		66	33		0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain