SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene98066

Length: 400 nt

UniGene Fasta

>sp_v3.0_unigene98066
GTTCAGAGATATGAAAAAGAGGTTGAGAATTTCACAACCGGGAAAGTTGCCTATTATATGACATTGATATGCTCTGCAATAGGTTGGCAGGTTTCTTCCGTTCCGTTGGTGGAGTGGGTTTGATATTTTTGGTTTCTTCCTTGTTCACAAATGTGATTAGCACTTTGGCCCTCCTTATTGTACCCATATTATCAGTGGCTTTCTTCCATGACAGAATGGAAGCTCTCAAAATTATTTCGATGTTGTTAAGTATATGGGGATTTGTTTCCTATATATATGGTGGGTACTTGGATTCAAAGCCTTCTACGGGTGTGTTGACCAGGATATCTGTTCTAGATGAAAGTTCATCAATAAATTGATAGCCATTTATATTTAAGTGGGTACTTGGATTCAAAGACTT

Ace file of the UniGene sp_v3.0_unigene98066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	purine permease 10 [Arabidopsis thaliana] sp\|O49725.2\|PUP10_ARATH RecName: Full=Probable purine permease 10; Short=AtPUP10 gb\|AEE84012.1\| purine permease 10 [Arabidopsis thaliana]	-	-	1.0e-21	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Chromosome undetermined scaffold_143, whole genome shotgun sequence	-	-	8.811e-06	-

Source	Gene names
Sma3	At4g18190; At4g18210; At4g18220; GSVIVT00003405001; GSVIVT00003407001; GSVIVT00018998001; OJ1743_B12.21-1; OJ1743_B12.21-2; Os02g0689200; OsI_08525; OsJ_07985; POPTRDRAFT_173696; POPTRDRAFT_173703; POPTRDRAFT_589957; POPTRDRAFT_591810; PUP10; PUP6; PUP9;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	purine base transmembrane transporter activity	GO:0005345	Molecular Function	-
Sma3	purine base transport	GO:0006863	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Nucleotide-sugar transporter	IPR007271	-	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18210.1	ATPUP10, PUP10 purine permease 10 chr4:10076175-10077495 FORWARD LENGTH=390	9.0e-24	63%
RefSeq	Arabidopsis thaliana	NP_193555.3	purine permease 10 [Arabidopsis thaliana]	1.0e-23	63%
RefSeq	Populus trichocarpa	XP_002326496.1	predicted protein [Populus trichocarpa]	5.0e-24	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLF0

Fln msg: Overlapping hits, possible frame ERROR between 111 and 102, your sequence is shorter than subject: 120 - 367

Fln protein: VQRYEKEVENFTTGKVAYYMTLICSAIGWQVSSxxxxxVGLIFLVSSLFTNVISTLALLIVPILSVAFFHDRMEALKIISMLLSIWGFVSYIYGGYLDSKPSTGVLTRISVLDESSSIN*

Protein Length: 121

Fln nts: GTTCAGAGATATGAAAAAGAGGTTGAGAATTTCACAACCGGGAAAGTTGCCTATTATATGACATTGATATGCTCTGCAATAGGTTGGCAGGTTTCTTCCxxxxxxxxxxxxxxxGTGGGTTTGATATTTTTGGTTTCTTCCTTGTTCACAAATGTGATTAGCACTTTGGCCCTCCTTATTGTACCCATATTATCAGTGGCTTTCTTCCATGACAGAATGGAAGCTCTCAAAATTATTTCGATGTTGTTAAGTATATGGGGATTTGTTTCCTATATATATGGTGGGTACTTGGATTCAAAGCCTTCTACGGGTGTGTTGACCAGGATATCTGTTCTAGATGAAAGTTCATCAATAAATTGATAGCCATTTATATTTAAGTGGGTACTTGGATTCAAAGACTT

Fln Alignment:

AllPine_a_c19000___EKEVENFTTGKVAYYMTLICSAIGWQVSxxxxxGLIFLVSSLFTNVISTLALLIVPILSVAFFHDRMEALKIISMLLSIWGFVSYIYGGYLDSKPSTG
B8LLF0_______________KEEAHSFTRGKVAYYMTLIWSAIGWQVCxxxxxGLIFLVSSLFSNVISTLALPVVPILSVGFFHDKMDALKIISMLLSIWGFVSYIFGGYVDSKPAMG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain