SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97787

Length: 198 nt

UniGene Fasta

>sp_v3.0_unigene97787
GGCGGGCGCACAGTACAAATATGAGCATAGCCTACCTTGATCCTGGAAATCTGGAGTCTGATTTGCAGGCGGGCGCACAATCTATTTCTTCATTCTGCCTTGGTTCTGTCTCGTAAAGTATCTCCTTCTACTTCTGGAATTAATTTAGCATGCAGATATTTCCTCATAAGAACCGGAGTTGCTCTGTTTGTAGCTATT

Ace file of the UniGene sp_v3.0_unigene97787

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	root-specific metal transporter [Malus baccata]	-	-	1.0e-08	75%
FL-Next	sp=Metal transporter Nramp6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Root-specific metal transporter	-	-	1.577e-09	-

Source	Gene names
Sma3	At1g15960; At1g80830; F23A5.18; GSVIVT00015427001; GSVIVT00015428001; GSVIVT00015429001; NRAMP1; NRAMP6; Nramp1; PMIT1; POPTRDRAFT_559270; POPTRDRAFT_760947; RCOM_0562970; RCOM_0563080; T24D18.6; VITISV_004328; VITISV_017979;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	iron ion transport	GO:0006826	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15960.1	NRAMP6, ATNRAMP6 NRAMP metal ion transporter 6 chr1:5482202-5485066 REVERSE LENGTH=527	1.0e-11	70%
RefSeq	Arabidopsis thaliana	NP_173048.3	metal transporter Nramp6 [Arabidopsis thaliana]	2.0e-11	70%
RefSeq	Populus trichocarpa	XP_002307453.1	nramp transporter [Populus trichocarpa]	2.0e-12	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S9N8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 256 aas, your sequence is shorter than subject: 66 - 527

Fln protein: GGRTVQI*A*PTLILEIWSLICRRAHNLFLHSALVLSRKVSPSTSGINLACRYFLIRTGVALFVAI

Protein Length: 67

Fln nts: GGCGGGCGCACAGTACAAATATGAGCATAGCCTACCTTGATCCTGGAAATCTGGAGTCTGATTTGCAGGCGGGCGCACAATCTATTTCTTCATTCTGCCTTGGTTCTGTCTCGTAAAGTATCTCCTTCTACTTCTGGAATTAATTTAGCATGCAGATATTTCCTCATAAGAACCGGAGTTGCTCTGTTTGTAGCTATT

Fln Alignment:

AllPine_a_c18555___HNLFLHSALVLSRKVSPSTSGINLACRYFLIRTGVALFVA
Q9S9N8_______________HNLFLHSALVLSRKIPRSVTGIKEACRYYLIESGLALMVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain