SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97649

Length: 861 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene97649

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative receptor-like protein kinase n=1 Tax=Arabidopsis thaliana RepID=Q9ZQC2_ARATH	-	-	0.0	46%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	53%
Sma3	Symbiosis receptor-like kinase	-	-	1.26e-11	-

Source	Gene names
Sma3	AT1G67720; AT2G28990; AT2G37050; AT4g29990; AT5G59650; AT5G59670; At2g28990; At2g29000; At2g37050; At4g29990; At5g59670; At5g61350; B1012G11.24; DMI2; F14F8_110; F18L15.120; F6G3.20; GSVIVT00010083001; GSVIVT00023073001; GSVIVT00033141001; GSVIVT000343700

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Opsin	IPR001760	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37050.3	Leucine-rich repeat protein kinase family protein chr2:15569290-15573477 FORWARD LENGTH=934	46%
RefSeq	Arabidopsis thaliana	NP_181242.3	putative receptor protein kinase [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002338172.1	predicted protein, partial [Populus trichocarpa]	51%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
421	25		75		0.996473
422			25	75	0.996473
425			25	75	0.996473
426		25		75	0.996473
427			25	75	0.996473
428			75	25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
470	481	TCC TCC TCC TCC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain