SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97638

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene97638
TGTAGAAAGCAGATGTATTCGGCTTTGGAGTGCTTGTACTTGAGATTATCAGCGGAAGAAAGAATCGTATTCTTGCTCAAGAAGAGTTTCTCATCGAAGGAGCATGGAGATTGTATAAAGCAGAGAAAGCGTTAGAAATTATGGACCCCACATTAGATGGTAGTTATTCATGGGAAGAAGGGATTAGAGTGATCAAAATTGGTCTTCTGTGCACGCAAGCAGT

Ace file of the UniGene sp_v3.0_unigene97638

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like protein kinase [Narcissus pseudonarcissus]	-	-	7.0e-13	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	Gene names
Sma3	GSVIVT00027565001; RCOM_0907020; VITISV_023204;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16670.1	Protein kinase superfamily protein chr1:5697846-5699492 FORWARD LENGTH=390	3.0e-17	45%
RefSeq	Arabidopsis thaliana	NP_564003.1	kinase domain-containing protein [Arabidopsis thaliana]	4.0e-17	45%
RefSeq	Populus trichocarpa	XP_002332189.1	predicted protein [Populus trichocarpa]	4.0e-18	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPW7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 82 aas, your sequence is shorter than subject: 73 - 702

Fln protein: *KADVFGFGVLVLEIISGRKNRILAQEEFLIEGAWRLYKAEKALEIMDPTLDGSYSWEEGIRVIKIGLLCTQA

Protein Length: 74

Fln nts: TGTAGAAAGCAGATGTATTCGGCTTTGGAGTGCTTGTACTTGAGATTATCAGCGGAAGAAAGAATCGTATTCTTGCTCAAGAAGAGTTTCTCATCGAAGGAGCATGGAGATTGTATAAAGCAGAGAAAGCGTTAGAAATTATGGACCCCACATTAGATGGTAGTTATTCATGGGAAGAAGGGATTAGAGTGATCAAAATTGGTCTTCTGTGCACGCAAGCAGT

Fln Alignment:

AllPine_a_c18236___KADVFGFGVLVLEIISGRKNRILAQE-EFLIEGAWRLYKAEKALEIMDPTLDGSYSWEEGIRVIKIGLLCTQA
C0PPW7_______________KADVFSFGVLVLEIISGRKNQSSTEDMEFLIEGTWRLYKANRGLEIMDPALKDSYSWEDGIRAIKIGLLCTQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain