SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97604

Length: 262 nt

UniGene Fasta

>sp_v3.0_unigene97604
TGCATATTGCAACTGATTGATGTGCTTTTGATGCTATGGACATGACTCTATTCTGGCTTTTCATGTAATTGAAATAGTTTTTCTATCGATGTTGCTTAAAGATCCTACAACCTAAACTGTTTGAAATGGTAAATTATATCACAGATATCTGGTCATACAGTCGGTGAAGTAAAGACTGTTGCTAACATGCATGAAAGGAAGACCGAAATGGCTCATCAAGATGATGCTTTTATTGCTCTTCTACGTGATTTGATACTTCGCA

Ace file of the UniGene sp_v3.0_unigene97604

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative lysine decarboxylase [Arabidopsis thaliana] gb\|AAO39932.1\| At5g06300 [Arabidopsis thaliana]	-	-	2.0e-05	69%
FL-Next	sp=Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10; Oryza sativa subsp. japonica (Rice).	-	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XDB8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 88 aas, your sequence is shorter than subject: 87 - 204

Fln protein: CILQLIDVLLMLWT*LYSGFSCN*NSFSIDVA*RSYNLNCLKW*IISQISGHTVGEVKTVANMHERKTEMAHQDDAFIALLRDLILR

Protein Length: 88

Fln nts: TGCATATTGCAACTGATTGATGTGCTTTTGATGCTATGGACATGACTCTATTCTGGCTTTTCATGTAATTGAAATAGTTTTTCTATCGATGTTGCTTAAAGATCCTACAACCTAAACTGTTTGAAATGGTAAATTATATCACAGATATCTGGTCATACAGTCGGTGAAGTAAAGACTGTTGCTAACATGCATGAAAGGAAGACCGAAATGGCTCATCAAGATGATGCTTTTATTGCTCTTCTACGTGATTTGATACTTCGCA

Fln Alignment:

AllPine_a_c18162___QISGHTVGEVKTVANMHERKTEMAHQDDAFIAL
Q7XDB8_______________EISGETVGEVRPVADMHQRKAEMARQSDAFIAL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain