SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97538

Length: 486 nt

UniGene Fasta

>sp_v3.0_unigene97538
CAGAAAAAAGCTTCTTCTTATCTGGGTAATCATGAGAAGATCTTCCAATTTGAGGGTAGGCGATTCTTTGATGAGTTAGACAGAGACGGTGATGGTCAAGTAACACTTGAGGACCTTCAAGTTGCCATGCAAAAGAGAAGGCTGCCACGACGTTATGCTCGCGAGTTTTTGCGGCGCACAAGGATCCACATGTTTGCAAAGTCGATTGGCTGGAAACAATTTCTGTCTCTAATGGAACAGAAGGAGCCAACTATGCTCCGAGCTTATAATACTTTATCTTTGAGTAAATCTGGCACTCTTCAGAAAAGCCAAGTATTAGCGTCACTGAAAAAAGCAGGCCTTCCAGCCACTGATGAAAATGTTGCAGCAATGATGCGGTTTTTGGATGCTGATACAGAAGGGTCTATTTCTTATGGCCATTTTCGCAACTTTATGCTGCTTCTTCCACCAGAACGGCTTGAAGATGATCCACGGAGCCTCTGGTTT

Ace file of the UniGene sp_v3.0_unigene97538

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative mitochondrial carrier protein [Arabidopsis thaliana]	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	Gene names
Sma3	At2g35800; GSVIVT00018239001; LOC_Os11g01270; LOC_Os12g01240; MICPUCDRAFT_51314; MICPUN_65976; OSTLU_17401; Os11g0103700; Os12g0103000; OsI_37129; OsJ_32642; OsJ_34901; Ot11g02610; PHYPADRAFT_182927; PHYPADRAFT_20805; POPTRDRAFT_765330; POPTRDRAFT_833847;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35800.1	mitochondrial substrate carrier family protein chr2:15044437-15048352 FORWARD LENGTH=823	75%
RefSeq	Arabidopsis thaliana	NP_850252.1	mitochondrial substrate carrier family protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002311112.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8H3

Fln msg: Distance to subject end: 69 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 162 - 247

Fln protein: QKKASSYLGNHEKIFQFEGRRFFDELDRDGDGQVTLEDLQVAMQKRRLPRRYAREFLRRTRIHMFAKSIGWKQFLSLMEQKEPTMLRAYNTLSLSKSGTLQKSQVLASLKKAGLPATDENVAAMMRFLDADTEGSISYGHFRNFMLLLPPERLEDDPRSLWF

Protein Length: 163

Fln nts: CAGAAAAAAGCTTCTTCTTATCTGGGTAATCATGAGAAGATCTTCCAATTTGAGGGTAGGCGATTCTTTGATGAGTTAGACAGAGACGGTGATGGTCAAGTAACACTTGAGGACCTTCAAGTTGCCATGCAAAAGAGAAGGCTGCCACGACGTTATGCTCGCGAGTTTTTGCGGCGCACAAGGATCCACATGTTTGCAAAGTCGATTGGCTGGAAACAATTTCTGTCTCTAATGGAACAGAAGGAGCCAACTATGCTCCGAGCTTATAATACTTTATCTTTGAGTAAATCTGGCACTCTTCAGAAAAGCCAAGTATTAGCGTCACTGAAAAAAGCAGGCCTTCCAGCCACTGATGAAAATGTTGCAGCAATGATGCGGTTTTTGGATGCTGATACAGAAGGGTCTATTTCTTATGGCCATTTTCGCAACTTTATGCTGCTTCTTCCACCAGAACGGCTTGAAGATGATCCACGGAGCCTCTGGTTT

Fln Alignment:

AllPine_a_c18036___QFEGRRFFDELDRDGDGQVTLEDLQVAMQKRRLPRRYAREFLRRTRIHMF-AKSIGWKQFLSLMEQKEPTMLRAYNTLSLSKSGTLQKSQVLASLKKAGLPATDENVAAMMRFLDADTEGSISYGHFRNFMXXXXXXXXXXXXXSLWF
D5A8H3_______________EIEGRRLFQELDRDGDGHATLSDIEDAIRRRKLPPFYASEIIKSAKKHYWLSRSFGWAEFSSLIKEKEPKMLSAFNSVRLCNCGTIHKSNLKALLQSASLPATERNVTAMLNFLNSDKEDSVSYSQFRNFMLFVPTDLIVNDPWTIWF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain