SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97376

Length: 1278 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene97376

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	L-galactose dehydrogenase n=2 Tax=Vitis vinifera RepID=A5JPK6_VITVI	-	-	0.0	73%
FL-Next	sp=L-galactose dehydrogenase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%

Source	ECs	Term	Type	e value	Identity
Sma3	Pyridoxal 4-dehydrogenase.	EC:1.1.1.107	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Vitamin B6 metabolism	00750		0.0	%

Source	Gene names
Sma3	RCOM_0816860;

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein chr4:16169670-16171446 REVERSE LENGTH=319	74%
RefSeq	Arabidopsis thaliana	NP_195093.1	D-threo-aldose 1-dehydrogenase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002298802.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O81884

Fln msg:

Fln protein: MAGIGVRVLGNTGLKVSFLGFGASPLGNHYGGNIKEEDAIAAVQEAFRLGINFFDSSPYYGDTLSEKMLGKALKTLMVPRDQYVVSTKCGRYAEGFDFSAERVTKSIDESLERLNLDYVDIFQCHDIEFGSLDQIVNETIPALQKLKEMGKIRYIGITGLPLYVFTYVLDRVPPGSVDVILSYCHYSINDTSLEDLLPYLKSKGVGVIAASPLSMGLLTDNGPPEWHPAPSEIMSACAAAAAHCKAKGKNISKLSLQYSLKNKDIASVLVGMNSAQQVRENITATVEVEEGRFIDQELLEEVEAIIRPVKNLTWPSGIVHN*

Protein Length: 323

Fln nts: ATGGGACACATATGTACAGTCTTCTTTGTTTTTGATATCTGAAAACTTTATCGTGTGTAATTA_-_ATGGCAGGTATCGGTGTAAGAGTGTTGGGCAACACTGGACTGAAGGTGAGCTTCTTGGGATTTGGAGCATCTCCCCTTGGAAATCATTATGGAGGAAATATAAAAGAAGAAGACGCCATTGCTGCGGTTCAGGAAGCTTTTCGTTTGGGAATCAACTTCTTCGACTCTTCACCTTACTATGGAGACACTTTATCTGAAAAGATGCTGGGAAAAGCCTTGAAGACTCTAATGGTTCCTAGAGATCAGTATGTAGTTTCAACAAAGTGTGGCCGATATGCAGAAGGTTTTGACTTTAGTGCTGAACGAGTAACAAAAAGTATAGATGAAAGCTTGGAAAGGTTGAACCTTGACTATGTCGACATCTTCCAATGTCATGATATTGAGTTTGGCTCACTTGATCAGATTGTCAATGAAACTATTCCAGCACTTCAAAAACTGAAGGAGATGGGAAAGATTCGATACATTGGTATTACTGGTCTCCCTCTCTATGTTTTCACCTATGTGCTTGACAGAGTCCCTCCTGGCTCAGTGGATGTGATTCTGTCATACTGTCATTATAGCATCAATGACACTTCACTGGAGGATTTATTGCCTTACTTGAAGAGCAAGGGAGTTGGAGTCATCGCTGCTTCTCCTCTGTCAATGGGCCTCCTTACTGACAATGGACCTCCAGAATGGCATCCTGCACCCTCAGAGATAATGTCTGCATGTGCAGCTGCTGCAGCTCATTGCAAAGCTAAGGGGAAGAATATCTCAAAACTGTCTTTGCAATATAGCTTGAAGAACAAGGATATTGCTTCAGTGTTGGTTGGCATGAACTCTGCTCAACAGGTTCGAGAAAATATTACTGCCACTGTTGAAGTTGAAGAAGGTCGATTTATTGATCAAGAGTTGCTGGAGGAAGTAGAAGCTATCATTAGGCCAGTGAAGAACCTAACTTGGCCAAGTGGTATTGTTCATAATTAG___CTTATTTTGTCATAAAGTTTGAAATATTTATTGCTTTATGATCTGATGCTTGACATTAAATGTTAGATTGCCCATTTTTTCGTGGGGCAATCTACATTATTACTCTATAATTAATTCTCAATAAAACCTTCAAGAAAGAACTTGTCAGCAGATGAGGCTTTTCTATTATCTCGAGCTAAAATTGCTTTGATAGATGAACTATGTGGACCCAAGATATGTTTTTCTTTGAATTTATCCATCATGATTTTG

Fln Alignment:

AllPine_a_c17610___MAGIGVRVLGNTGLKVSFLGFGASPLGNHYGGNIKEEDAIAAVQEAFRLGINFFDSSPYYGDTLSEKMLGKALKTLMVPRDQYVVSTKCGRYAEGFDFSAERVTKSIDESLERLNLDYVDIFQCHDIEFGSLDQIVNETIPALQKLKEMGKIRYIGITGLPLYVFTYVLDRVPPGSVDVILSYCHYSINDTSLEDLLPYLKSKGVGVIAASPLSMGLLTDNGPPEWHPAPSEIMSXXXXXXXXXXXXGKNISKLSLQYSLKNKDIASVLVGMNSAQQVRENITATVEVEEGRFIDQELLEEVEAIIRPVKNLTWPSGIVHN
O81884_______________MTKIELRALGNTGLKVSAVGFGASPLGSVFGP-VAEDDAVATVREAFRLGINFFDTSPYYGGTLSEKMLGKGLKALQVPRSDYIVATKCGRYKEGFDFSAERVRKSIDESLERLQLDYVDILHCHDIEFGSLDQIVSETIPALQKLKQEGKTRFIGITGLPLDIFTYVLDRVPPGTVDVILSYCHYGVNDSTLLDLLPYLKSKGVGVISASPLAMGLLTEQGPPEWHPASPELKSASKAAVAHCKSKGKKITKLALQYSLANKEISSVLVGMSSVSQVEENVAAVTEL-ESLGMDQETLSEVEAILEPVKNLTWPSGIHQN

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1064	80		20	0.995494
1119		75	25	0.996475
1203		33	66	0.997454

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain