SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97367

Length: 1927 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene97367

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[K] COG5224 CCAAT-binding factor, subunit B	-	-	7.0e-05	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	YA3	-	-	4.799e-08	-

Source	Gene names
Sma3	AT5G12840; At1g17590; At1g30500; At1g54160; At3g14020; At3g20910; At5g12840; C-HAP2B; CBF-A22; CBF-B; EMB2220; F15I1.26; F26G16.12; GSVIVT00003534001; GSVIVT00024601001; GSVIVT00028796001; HAP2.1; HAP2A; LOC_Os03g07880; LOC_Os03g48970; LOC_Os12g41880; MFD

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	CCAAT-binding factor complex	GO:0016602	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3		GO:0032582	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30500.2	NF-YA7 nuclear factor Y, subunit A7 chr1:10804736-10805896 REVERSE LENGTH=190	1.0e-15	66%
RefSeq	Arabidopsis thaliana	NP_849733.1	nuclear transcription factor Y subunit A-7 [Arabidopsis thaliana]	2.0e-15	66%
RefSeq	Populus trichocarpa	XP_002332527.1	predicted protein [Populus trichocarpa]	4.0e-17	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQJ9

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: VKIQVQ*TLSTMNYHINLGI*EKIDLYNGKCQVLVLSWVSGSN*Y*I*LHSFWVILIANVN*EVVASGKRCFPVWILINVMLYLCLISMSCFQIHPNMLGVQQARMPLPLDMTEEEPVYVNAKQYHGILRRRQLRAKAESENKLIKTRKVLTSMFSLLSIYLPCFVQSRACNRNTISGICTLL*SLNQHESSYNMRFIAANIVFILLLLIFYGNLLNSIGGWLYMDTTILFSIFQLCFVIVLLVLFVAL*PYLHESRHLHVMKRARGCGGRFLNTKKLEDMKANVDNGKTPEGHTAQAGSSSGSEVLQSENGNGNSTQEVHGACGMSGSEVTSIAQSSENGTSYQYSHTNGTYLNHYQHPHFHISAFHPLSSGGEEGSSAKGGSIISGGSQQRVVVIQ*

Protein Length: 400

Fln nts: GTTAAAATTCAAGTGCAATAGACTCTATCCACCATGAATTACCACATAAATCTAGGCATTTAGGAGAAGATAGATTTATATAATGGAAAATGTCAAGTGTTAGTGCTCTCATGGGTATCGGGATCTAACTGATACTAGATATAGCTCCACTCTTTTTGGGTCATTTTGATTGCTAATGTCAACTAAGAAGTTGTAGCAAGTGGGAAGAGATGCTTTCCTGTTTGGATCTTGATAAATGTAATGCTTTATTTATGCCTAATATCAATGAGTTGTTTTCAGATTCATCCCAACATGCTTGGGGTGCAACAGGCTCGCATGCCCTTGCCATTGGATATGACAGAAGAAGAACCAGTATATGTTAATGCTAAACAATATCATGGGATTCTCAGGCGCAGACAACTGCGAGCGAAGGCAGAGTCTGAGAATAAACTGATTAAGACCAGGAAGGTACTGACATCTATGTTTTCATTGCTATCTATTTATTTGCCTTGTTTTGTTCAAAGCAGGGCATGTAATAGGAATACAATTTCTGGAATATGTACCTTATTATAGAGCCTGAACCAACATGAAAGCAGCTATAACATGCGTTTCATTGCTGCGAACATAGTATTTATTCTTTTGCTCTTAATCTTTTATGGTAATTTATTGAATTCCATTGGTGGTTGGTTATATATGGATACGACTATTTTATTTTCAATTTTTCAATTGTGTTTTGTAATTGTCTTACTCGTGTTATTTGTTGCTTTATAGCCATATCTACATGAATCTCGACATCTTCATGTCATGAAGAGAGCGAGAGGGTGTGGTGGTCGCTTTCTGAACACCAAAAAGTTAGAGGACATGAAAGCAAATGTGGATAATGGAAAGACACCAGAAGGACATACTGCGCAGGCTGGGAGTTCTTCAGGTTCTGAAGTTCTGCAATCTGAAAATGGAAATGGAAATTCTACCCAGGAGGTACATGGTGCTTGTGGGATGTCAGGCTCAGAAGTTACTAGCATTGCACAGTCATCTGAAAATGGTACAAGTTATCAATATTCTCATACTAATGGAACATATCTTAATCACTATCAACATCCACATTTCCATATATCAGCATTTCACCCACTCTCAAGTGGAGGTGAGGAAGGCAGCAGTGCAAAAGGTGGGAGCATAATATCTGGTGGATCACAACAACGAGTTGTTGTGATCCAGTGA___AGTGTGAAATAAGATGTTAGTGGTGAGAATCTCACGTGCTTGTTTCTCCGTGTTACGTTGACTATAAAGATAGGTCTCAATGAGTGCGAAGATCATAAAATGAAACAGATTTTATGAAGTCTTTGCAATTTTATGGTTCAGAGGCCATTATCAGTAAAACAGGTAACCCGTGATGGTTTATTTTTGAATGGGTTGCAGTTTGCACAAACACGGAGCTGCCTTGCATTTGAGATTCTTCTTCTCGTGGAAGCAGCCAGATGGGAGAGTCTGTTAGTTTGTGGCATGTTCTGATGTCACAGATTAACTTTTCAATTAGGTTTGGACAAGAAATTGACCTAACCTAACCGATCTGGTATTTCCTATGGCAATTCATCCTTGGCTTAGTTTTAAATCAGGTCATGATAATGTTTGAAGTTGTTTCGTAAGTAAATGGCATTTGACATGTTTTGATAGGCTGGAAGGTTTGTATGAAAGCCTAACGAGTGTTGTAGACATTTAACACTCTAATGGTAGGACCAATCGACCTTTCAATAAACCTATAGCGTGCTGCTGAAAACTCGAGACTATTTTATGTACTTCATCTTTATTGTGTGTGCATGTTCAAACTTGGAAACATTGTGGACAGTTTTAGTGTGAAGTTGTATGTTCATGTCTAATCAGCAGCCTAATTATGTGAATGGTCGTTTGTTCTATTTGTATCGTTTAGAATTTTCATATAATGATGATGGCG

Fln Alignment:

AllPine_a_c17585___IHPNMLGVQQARMPLPLDMTEEEPVYVNAKQYHGILRRRQLRAKAESENKLIKTRK
C0PQJ9_______________IHPNMLGVQQARMPLPLDMTEEEPVYVNAKQYHGILRRRQLRAKAESENKLIKTRK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
538	66		33		0.997452
1249	20	80			0.995493
1324	75		25		0.996473
1675	97		2		0.946738
1779	97		2		0.964186
1781	4	95			0.999989
1920			33	66	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain