SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97341

Length: 488 nt

UniGene Fasta

>sp_v3.0_unigene97341
TTCAGACTACTTGAGTTTCTATTACAAAGATTGTATGCATCAATGGAAAGAGATAAAGAATTGCAAGCTTGGTGGAGTGAGATTGTAAATGTTGGGCATGGAGATCTTAAGGATGATTTAAATAGATGGTACAAAATGGAGACAAAAGAGGAAGTTGTTGAAGCAGTGACCACTATTATGTGGATTGGATCAGCTCATCATGCTGCAGTCAACTTCGGGCAATATTCTTATGGAGGTTACATGCCTAATCTTGTCACCATGAGTAGACAACTTATTCCAGATAAAGGTTCTATAGAATACAATGAGATGGTGAGAGATCTAGATGCATATTTCCTTAAAACTGTATCTACTCCATTCCAAGCCACCCTTGTCATGGCCATTTTGGAGATCTTAGCAAAGCATGCAAACACGAAAGATACATAGGGCAAATAGATGGATCTACACTAGAATGGGATGATGACAAAGGAATAGCTGAAGCATTCAAGCAA

Ace file of the UniGene sp_v3.0_unigene97341

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=B8LLK5_PICSI	-	-	73%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	GSVIVT00013309001; GSVIVT00019960001; GSVIVT00022800001; GSVIVT00022801001; LOC_Os03g49260; LOC_Os03g49350; LOC_Os03g49380; LOC_Os03g52860; LOX; LOX1; LOX1.1; LOX1.2; LOX1.3; LOX1.5; LOX10; LOX2; LOX3; LOX4; LOXA; Lox; Lox1; Lox1:Ps:1; LoxB; LoxC; LoxG; L

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G55020.1	LOX1, ATLOX1 lipoxygenase 1 chr1:20525798-20530143 FORWARD LENGTH=859	7.0e-28	45%
RefSeq	Arabidopsis thaliana	NP_175900.1	lipoxygenase 1 [Arabidopsis thaliana]	9.0e-28	45%
RefSeq	Populus trichocarpa	XP_002315780.1	predicted protein [Populus trichocarpa]	4.0e-31	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 59 aas, your sequence is shorter than subject: 141 - 930

Fln protein: FRLLEFLLQRLYASMERDKELQAWWSEIVNVGHGDLKDDLNRWYKMETKEEVVEAVTTIMWIGSAHHAAVNFGQYSYGGYMPNLVTMSRQLIPDKGSIEYNEMVRDLDAYFLKTVSTPFQATLVMAILEILAKHANTKDT*

Protein Length: 142

Fln nts: TTCAGACTACTTGAGTTTCTATTACAAAGATTGTATGCATCAATGGAAAGAGATAAAGAATTGCAAGCTTGGTGGAGTGAGATTGTAAATGTTGGGCATGGAGATCTTAAGGATGATTTAAATAGATGGTACAAAATGGAGACAAAAGAGGAAGTTGTTGAAGCAGTGACCACTATTATGTGGATTGGATCAGCTCATCATGCTGCAGTCAACTTCGGGCAATATTCTTATGGAGGTTACATGCCTAATCTTGTCACCATGAGTAGACAACTTATTCCAGATAAAGGTTCTATAGAATACAATGAGATGGTGAGAGATCTAGATGCATATTTCCTTAAAACTGTATCTACTCCATTCCAAGCCACCCTTGTCATGGCCATTTTGGAGATCTTAGCAAAGCATGCAAACACGAAAGATACATAGGGCAAATAGATGGATCTACACTAGAATGGGATGATGACAAAGGAATAGCTGAAGCATTCAAGCAA

Fln Alignment:

AllPine_a_c17517___ASMERDKELQAWWSEIVNVGHGDLKDDLNRWYKMXXXXXXXXXXXXIMWIGSAHHAAVNFGQYSYGGYMPNLVTMSRQLIPDKGSIEYNEMVRDLDAYFLKTVSTPFQATLVMAILEILAKHA
B8LLK5_______________ASIKRDQELQAWWNEIVNVGHGDLKDDPSRWYKMETKEEVVEAVTTIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain