SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97324

Length: 1186 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene97324

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase, putative [Oryza sativa Japonica Group] gb\|ABA91873.1\| Lipase family protein, expressed [Oryza sativa Japonica Group]	-	-	3.0e-39	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Putative uncharacterized protein	-	-	2.176e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLF3

Fln msg: your sequence is shorter than subject: 335 - 609

Fln protein: RRDLGCHSFVLEEVMKNSIRGRRLANPNSELSYQMGISLELEAIGVGAQHEDLGCALRRAGETEKELNKNVHKLASELGQKQCTMAELEWYKEVCEKKHGAAYYDSFKNQNDKKDIEANERRLKLAGFWDGIIEMWENHQLPSDFQSQNKWINAGNAYRRLVEPLDIAYFYRTANADKNYISDGRPRRHKVLQKWLEDKEKTRSSRVQRPRTKPASLTEDTCFWAYVEEAWKDLESLKEGQHQRLQSLKQFEHYVTNLKNALKISSDIFLEGSSFKLWSESWEEYKRAHSL*WSCPLFEIIECEGVNLQGIPIKTLFLTLKKRTVFQFSCLLCF*

Protein Length: 336

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTTTTGGAGGAGGTTATGAAAAATTCCATTAGAGGGAGAAGATTAGCGAATCCCAATTCAGAATTATCTTACCAGATGGGTATTTCATTGGAGCTAGAAGCTATTGGTGTTGGAGCTCAGCATGAAGATTTAGGGTGTGCCTTACGAAGGGCTGGAGAGACTGAAAAAGAGCTTAACAAAAATGTTCATAAGCTAGCTAGTGAATTAGGTCAAAAGCAGTGTACTATGGCAGAGCTTGAGTGGTATAAAGAGGTTTGTGAGAAGAAACATGGAGCTGCATATTATGATTCCTTCAAGAACCAAAATGACAAGAAGGATATTGAGGCTAATGAGCGCAGGTTAAAGCTCGCAGGGTTTTGGGATGGGATTATTGAAATGTGGGAGAATCATCAGTTACCAAGTGATTTCCAATCCCAAAATAAGTGGATAAACGCTGGTAATGCATATAGAAGACTTGTAGAGCCTCTGGATATTGCATATTTTTATCGCACAGCTAATGCCGACAAAAACTATATTTCAGATGGAAGACCCCGTCGTCATAAAGTTCTTCAGAAATGGTTGGAAGATAAAGAAAAAACTCGCAGTTCAAGGGTTCAAAGACCCCGCACCAAGCCTGCATCCCTCACCGAGGACACATGCTTTTGGGCATATGTAGAAGAGGCTTGGAAAGACCTGGAAAGCCTCAAAGAAGGACAACACCAGAGGCTACAAAGTCTGAAACAGTTTGAACATTATGTGACAAACCTGAAGAACGCTCTCAAAATTTCTTCAGATATTTTCTTGGAAGGAAGCAGTTTCAAATTGTGGTCAGAATCATGGGAAGAATACAAGAGAGCTCACTCTCTTTAATGGAGCTGTCCTTTATTTGAGATAATTGAATGTGAAGGGGTGAATTTGCAGGGCATCCCAATAAAAACGCTGTTTCTAACTTTGAAGAAAAGGACCGTCTTCCAATTTAGTTGCTTGCTCTGTTTTTGA___AACGGAGTTTTTGTTTCGTTTTTGAGATGTAACTTCTGTCGCTAACTCTGGCGAAGAAGACTTTCTTGCAGTTACATTGCTGGTTTTGCTTGTGAGATGCCATTTCCTTTGACTACTGTAATGCTGTGATCGGTGAGAAATGTATTTTGCTTCAGGAGATTTACCAAGAATTGGATTTTCG

Fln Alignment:

AllPine_a_c17451___VLEEVMKNSIRGRRLANPNSELSYQMGISLELEAIGVGAQHEDLGCALRRAGETEKELNKNVHKLASELGQKQCTMAELEWYKEVCEKKHGAAYYDSFKNQNDKKDIEANERRLKLAGFWDGIIEMWENHQLPSDFQSQNKWINAGNAYRRLVEPLDIAYFYRTANADKNYISDGRPRRHKVLQKWLEDKEKTRSSRVQRPRTKPASLTEDTCFWAYVEEAWKDLESLKEGQHQRLQSLKQFEHYVTNLKNALKISSDIFLEGSSFKLWSESWEEYKRAHSL*WSCPLFEIIE-CEGVNLQGI
B8LLF3_______________VLKHVIEKFISGRRIANPDSDSFYEMGISLQLEAIGVGVQDNPARIALQRAGETENERNTNVDKLAIKLGEKQCRMAELEWYKERCEKEDGIVYYDSFKNQNGKKDIHANERRLKLEGFWDEIIEMWEKHELPSDFESRNKWINAGTTYRRLVEPLDIAFYYRTCKGNGNYLSYGRPNRHKVLQKWMEEKEKTRSSISRGLRTKRASLTLDSRFWAYVEEARKDLENLKRGQHQRLQNLEKFEEYVTTMEKALSISSDVFMKGSSFVIWWEEWKEYKKKQSPEWSSPLYKIMEKLEGLRLQGV

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
93	33	66			0.999978
137	20			80	0.995493
138	20			80	0.995493
139			80	20	0.995493
141	80			20	0.995493
279	25		75		0.996473
332	50			50	1.0
398		33		66	0.997452
633	40	60			1.0
667	40		60		1.0
749	60		40		1.0
757	11			88	0.923564
765			50	50	1.0
774	88	11			0.923564
775	88		11		0.923564
776	88			11	0.923564
778	44	44	11		1.0
782	88	11			0.923564
783		11	88		0.923564
784	88			11	0.923564
785	88			11	0.923564
786		90	10		0.90298
790		90	10		0.90298
793		88	11		0.923564
795	77	22			0.999999
796	77	11		11	0.968133
797	77	11		11	0.968133
798	11			88	0.923564
799			11	88	0.923564
800			11	88	0.923564
807		11	88		0.923564
808	88			11	0.923564
809		12		87	0.992554
812		11		88	0.923564
813			11	88	0.923564
814		22		77	0.999999
816			11	88	0.923564
821	88	11			0.923564
822		11	88		0.923564
823			88	11	0.923564
824	88			11	0.923564
825	88		11		0.923564
828	88			11	0.923564
830	44			55	1.0
831		11		88	0.923564
832	11			88	0.923564
835	88	11			0.923566
852	90		10		0.90298
854		10	90		0.90298
856			90	10	0.90298
857	90		10		0.90298
859		10	90		0.90298
860	90	10			0.90298
861	90			10	0.90298
863	90		10		0.902983
864		90	10		0.902983
865	90	10			0.902983
866	90			10	0.902983
867			90	10	0.903076
868	80			20	0.999996
869		12	87		0.992554
872	12		75	12	0.975346
883		44		55	1.0
914		42		57	1.0
921	14		85		0.993533
946		66	33		1.0
1132	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain