SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97311

Length: 1526 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene97311

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	2.0e-25	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Expansin-like protein	-	-	2.671e-11	-

Source	Gene names
Sma3	At3g45960; At3g45970; At4g38400; EXLA1; EXLA2; EXLA3; EXPL1; EXPL2; EXPL3; F16L2_180; F22I13.170; GSVIVT00036225001; LOC_Os03g04020; LOC_Os07g29290; LOC_Os10g39640; OJ1004C08.4; OSJNBb0015I11.10; Os03g0132200; Os07g0475400; Os10g0542400; OsI_09865; OsI_25

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sexual reproduction	GO:0019953	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR005132	-	-
Sma3	Major pollen allergen Lol pI	IPR005795	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38400.1	ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 expansin-like A2 chr4:17978675-17979665 REVERSE LENGTH=265	2.0e-25	56%
RefSeq	Arabidopsis thaliana	NP_195553.1	expansin-like A2 [Arabidopsis thaliana]	2.0e-25	56%
RefSeq	Populus trichocarpa	XP_002305545.1	hypothetical protein POPTRDRAFT_713415 [Populus trichocarpa]	4.0e-28	56%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMA2

Fln msg: Separated hits, possible frame ERROR between 585 and 1182, Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 339 - 274

Fln protein: LYYRILCDYGSQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITEVDIDPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVGSSGWQYMTRKNGAIWGIQNPPIGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGVQITEIAQEGCSPCETGNWTDTSVNLL*

Protein Length: 340

Fln nts: GCACGGGGAAGATGTTTGACTTTCTGTAATGAAACTTGGATTAAAATGGTAACTCCTAGGTTTTCTAAATTTTCCATATTTTATTTGACTGATGCAGCATGAAATAGTAATCATTGTCAGGAACTTAGCTTAAAGTATTCTTTTTTTCAGATGAAAAAAATGCTGATTTATATAAGCTCAAAATATTCCTTACTTGAACACTTATTAGTAATAAAATTATTGACTATCCTATTGAATTCCAATGGATGGTAGAGGGCAGTGGCCATCTTATTTTAGAATCCTTGAAAGTTAATCATTGTACTCTTACATCTTATTCGACTATACCTTTTACTGAGAAGTTTTAGAGGGACATATATTTGTAGTGATTGTGATCTAGAAATGAACAGTCACTGCAGAGGTAAGGAAGTTAAACAGAAACTTATGAATGTTTACATTTGACTTTATTACAGAATTCTCTGTGACTATGGAAGCCAAAACATGACTGTGAAAGTAGACAAAAGCAGTAAATATCCAGACTATCTTGCTGTCCAGTTTTTGTATCAAGGAGGCCAAACAGACATTACAGAGGTAGACATTGACCCGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGGTGGGATCATCAGGTTGGCAGTATATGACCCGCAAAAACGGTGCAATTTGGGGCATTCAGAATCCTCCCATAGGTTCCCTGTCGTTTCGGTTATTGGTTACAGGCGGGTACGATGGGAGTTGGGTGTGGCCTACAAGAAATTTACTGCCCGCAATCTGGAGGCCAGGCTCTGTTTATGAATCTGGAGTTCAGATCACAGAAATTGCGCAAGAAGGCTGTAGTCCCTGCGAAACTGGCAACTGGACTGACACATCTGTTAATTTATTGTGATAATCCACAGTGGAGTAGAGCAATTGTTTGAGGCATAGGACTGAGAGTTGTTTCTAATTGGCTAGCATAGTC

Fln Alignment:

AllPine_a_c17419___YYRILCDYGSQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITEVDIDPVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVGSSGWQYMTRKNGAIWGIQNPPIGSLSFRLLVTGGYDGSWVWPTRNLLPAIWRPGSVYESGVQITEIAQEGCSPCETGNWTDTSVN
A9NMA2_______________YKRIPCEYGGQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITAVEVDQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVGSSGWQYMTRNQGAIWGMQNPPRGYLSFRLLVTGGYDGSWVWPRRNLLPSIWTPGSVYESGIQITEIAQEGCSPCETGNWTDTYVN

SNPs (tot: 6)

Position	A %	C %	T %	Probability
630		20	80	0.995493
730		11	88	0.991528
740		12	87	0.992554
847	9	90		0.999872
903		10	90	0.90298
1515		6	93	0.999264

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain