SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97309

Length: 483 nt

UniGene Fasta

>sp_v3.0_unigene97309
ATGGGGAACAGTAACAGCTCTTGTGGGTTCAAGTGGTGCGGGAAAAAGTACAGTTGTGCAGCTCTTGGCACGCTTCTATGAGCCAGTACAAGGTCGAATAACAATAGCTGGAGAAGATGTGCGGATGTTTGACAAAACTGAATGGGCACGTACTGTTTCTATTGTGAACCAGGAGCCAGTGTTATTTGCAATGTCAGTTGCAGAAAATATTGCCTATGGATTACCAAATGAGCAAATTGCACAAGAAGATATTGTTTCAGTTGCTAAAGCTGCCAATGCCCATGATTTCATCATTTCTCTTCCACAGGGATATGACACACTAGTGGGCGAACGTGGAAGCTTGTTAAGTGGAGGACAACGTCAGAGAGTTGCCATAGCGAGAGCTCTGTTGAAGAATGCTCCACTATTGATACTTGATGAGGCAACCAGTGCTTTGGATGCTGTTAGTGAGCGCCTTGTACAGATGCCCTTGACCGTTTGATG

Ace file of the UniGene sp_v3.0_unigene97309

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter B family member 28 n=4 Tax=Arabidopsis thaliana RepID=AB28B_ARATH	-	-	85%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	55%
Sma3	Multidrug/pheromone exporter, MDR family, ABC transporter family	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphate-transporting ATPase.	EC:3.6.3.27	-	1.52e-17	-
Sma3	Peptide-transporting ATPase.	EC:3.6.3.43	-	8.238e-08	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	1.00795e-41	-

Source	Gene names
Sma3	ALS1; At1g02520; At1g02530; At1g10680; At1g27940; At1g28010; At2g36910; At2g47000; At3g28344; At3g28345; At3g28360; At3g28380; At3g28390; At3g28415; At3g28860; At3g30875; At3g62150; At4g01820; At4g01830; At4g18050; At4g25450; At4g25960; At5g39040; At5g465

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	response to blue light	GO:0009637	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	auxin efflux	GO:0010315	Biological Process	-
Sma3	basipetal auxin transport	GO:0010540	Biological Process	-
Sma3	acropetal auxin transport	GO:0010541	Biological Process	-
Sma3	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G25450.1	ATNAP8, NAP8 non-intrinsic ABC protein 8 chr4:13009845-13013912 REVERSE LENGTH=714	85%
RefSeq	Arabidopsis thaliana	NP_001078446.1	ABC transporter B family member 28 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002321879.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 59 aas, your sequence is shorter than subject: 160 - 1316

Fln protein: WGTVTALVGSSGAGKSTVVQLLARFYEPVQGRITIAGEDVRMFDKTEWARTVSIVNQEPVLFAMSVAENIAYGLPNEQIAQEDIVSVAKAANAHDFIISLPQGYDTLVGERGSLLSGGQRQRVAIARALLKNAPLLILDEATSALDAVSERLVQMPLTV*

Protein Length: 161

Fln nts: ATGGGGAACAGTAACAGCTCTTGTGGGTTCAAGTGGTGCGGGAAAAAGTACAGTTGTGCAGCTCTTGGCACGCTTCTATGAGCCAGTACAAGGTCGAATAACAATAGCTGGAGAAGATGTGCGGATGTTTGACAAAACTGAATGGGCACGTACTGTTTCTATTGTGAACCAGGAGCCAGTGTTATTTGCAATGTCAGTTGCAGAAAATATTGCCTATGGATTACCAAATGAGCAAATTGCACAAGAAGATATTGTTTCAGTTGCTAAAGCTGCCAATGCCCATGATTTCATCATTTCTCTTCCACAGGGATATGACACACTAGTGGGCGAACGTGGAAGCTTGTTAAGTGGAGGACAACGTCAGAGAGTTGCCATAGCGAGAGCTCTGTTGAAGAATGCTCCACTATTGATACTTGATGAGGCAACCAGTGCTTTGGATGCTGTTAGTGAGCGCCTTGTACAGATGCCCTTGACCGTTTGATG

Fln Alignment:

AllPine_a_c17415___GTVTALVGSSGAGKSTVVQLLARFYEPVQGRITIAGEDVRMFDKTEWARTVSIVNQEPVLFAMSVAENIAYGLPNEQIAQEDIVSVAKAANAHDFIISLPQGYDTLVGERGSLLSGGQRQRVAIARALLKNAPLLILDEATSALDAVSERLVQ
E6Y0T0_______________GKTVALVGESGSGKSTAIALLERFYDPDSGRIFLDGVEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGA-VTDEQIIAAAEAANAHKFISSLPQGYNINVGERGVQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
246			66	33	0.997458
247	66			33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain