SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97293

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene97293
ATCAATTCCCCCATGAAGGACTCACCAGTGGGATGCCGATATTTTCCAAGGGATTGATCGGAGGCTCGGTTGTCTGGGCTCAATATACAGTAGCGTTTTCCCGTAGAGGCGAGAGTGTAAACCAAGGTACCCTGGTGGTTTTCAATTTGGATGCCAACATCTCAGTTGAGACACTGAGATCAGTGTTCGAATCCTATGGAGCTGTGAAGGAGGTGAGGGAGACGCCATGGAAAGGGCACCACAAGTTTGTTGAGTTCTTTGATGTGCGGGATGCTGCTCGTGCGCTGAAGGAAATGGATGGTCAAGATATTGGCGGGAGACGAGTTAAAATAGAATTCAGTCGACCTGGTGGCCAAGGTCGCATGAAAGGACGGAGCCAGGCAGCCGTATTATGCCCAGTGCTACTGAACTTCCAAATACCGATCACCTACAACAGCAAAGCTGGAATCCAGAGAAAGAATATGTACCAAGCCAGGTTCAGATATCTCGTATGTTCTTGCCACAGATT

Ace file of the UniGene sp_v3.0_unigene97293 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	2.0e-06	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	AML1	-	-	2.457e-14	-

Source	Gene names
Sma3	AT4G18120; AT4g18120; At1g29400; At1g67770; F15D2.30; F15J5.90; GSVIVT00003386001; GSVIVT00006196001; GSVIVT00018040001; GSVIVT00018912001; GSVIVT00030716001; MtrDRAFT_AC158464g2v2; OJ1008_D06.12-1; OML2; OML5; OSJNBa0086N11.15; Os02g0319100; Os02g0719800

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA recognition motif 2	IPR007201	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26120.1	TEL1 terminal EAR1-like 1 chr3:9546398-9549186 FORWARD LENGTH=615	2.0e-33	57%
RefSeq	Arabidopsis thaliana	NP_189242.1	terminal EAR1-like 1 [Arabidopsis thaliana]	3.0e-33	57%
RefSeq	Populus trichocarpa	XP_002311749.1	predicted protein [Populus trichocarpa]	2.0e-36	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKG9

Fln msg: Distance to subject end: 485 aas, your sequence is shorter than subject: 168 - 892

Fln protein: QFPHEGLTSGMPIFSKGLIGGSVVWAQYTVAFSRRGESVNQGTLVVFNLDANISVETLRSVFESYGAVKEVRETPWKGHHKFVEFFDVRDAARALKEMDGQDIGGRRVKIEFSRPGGQGRMKGRSQAAVLCPVLLNFQIPITYNSKAGIQRKNMYQARFRYLVCSCHR

Protein Length: 169

Fln nts: ATCAATTCCCCCATGAAGGACTCACCAGTGGGATGCCGATATTTTCCAAGGGATTGATCGGAGGCTCGGTTGTCTGGGCTCAATATACAGTAGCGTTTTCCCGTAGAGGCGAGAGTGTAAACCAAGGTACCCTGGTGGTTTTCAATTTGGATGCCAACATCTCAGTTGAGACACTGAGATCAGTGTTCGAATCCTATGGAGCTGTGAAGGAGGTGAGGGAGACGCCATGGAAAGGGCACCACAAGTTTGTTGAGTTCTTTGATGTGCGGGATGCTGCTCGTGCGCTGAAGGAAATGGATGGTCAAGATATTGGCGGGAGACGAGTTAAAATAGAATTCAGTCGACCTGGTGGCCAAGGTCGCATGAAAGGACGGAGCCAGGCAGCCGTATTATGCCCAGTGCTACTGAACTTCCAAATACCGATCACCTACAACAGCAAAGCTGGAATCCAGAGAAAGAATATGTACCAAGCCAGGTTCAGATATCTCGTATGTTCTTGCCACAGATT

Fln Alignment:

AllPine_a_c17356___ESVNQGTLVVFNLDANISVETLRSVFESYGAVKEVRETPWKGHHKFVEFFDVRDAARALKEMDGQDIGGRRVKIEFSRPGGQGR
B8LKG9_______________KDINQGTLVVFNLDPSVSNDDLRRIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEEALRALNKSDIAGKRIKLEPSRPGGARR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain