SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97289

Length: 421 nt

UniGene Fasta

>sp_v3.0_unigene97289
AGGAAGATGAAGAAGAGCAGGATGGGGGATTTCCTTGACTGCAGCAGCAGCTGCCAATGCAGGTTCTGACAACACATCTACAAGCAGTTCAGGATTGCAGCTTCCAGCTCGTCCAGCAGGCCTAGGAGCTGCAGCACCATTACTAGGGCCCCCTCCTCGTGCAGTGCAGCAGTCCAGAGCAAATGGTACTTCGGCATCCCATTCATCCCAACTTGTGGAGGATCAGTCTACTGAAGATGATGAGAATAATGAAACCCGTGAGAAGCTTCAGATGATCAGAGTGAGATTTCTGCGACTTGCCCATAGATTAGGTCAGACTCCACACAATGTTGTGGTTGCACAGGTCTTGTACAGGCTTGGTCTGGCAGAGCAGCTGAGGGGAAGCAGAAATTCCAGCAGAACTGGAGCCTTCAGCTTTGAC

Ace file of the UniGene sp_v3.0_unigene97289

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translocase of chloroplast 132 [Arabidopsis thaliana] sp\|Q9SLF3.1\|TC132_ARATH RecName: Full=Translocase of chloroplast 132, chloroplastic; Short=AtToc132; AltName: Full=132 kDa chloroplast outer envelope protein gb\|AAD24598.1\| putative chloroplast outer m	-	-	7.0e-27	75%
FL-Next	sp=Translocase of chloroplast 132, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, Acting on GTP; involved in cellular and subcellular movement.	EC:3.6.5.-	-	6.652e-08	-

Source	Gene names
Sma3	At2g16640; At3g16620; GSVIVT00036085001; LOC_Os10g40110; MGL6.15; OSJNBa0082M15.3; Os10g0548800; OsI_34561; OsJ_32367; PHYPADRAFT_188734; PHYPADRAFT_189669; PHYPADRAFT_216050; PHYPADRAFT_216964; POPTRDRAFT_200844; POPTRDRAFT_713242; POPTRDRAFT_875946; RCO

Source	GOs	Term	Type	Identity
Sma3	chloroplast outer membrane	GO:0009707	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	viral envelope	GO:0019031	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	protein targeting to chloroplast	GO:0045036	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chloroplast protein import component Toc86/159	IPR005690	-	0.0	-
Sma3	AIG1	IPR006703	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G16640.1	ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 chr2:7211489-7215109 REVERSE LENGTH=1206	3.0e-32	75%
RefSeq	Arabidopsis thaliana	NP_179255.1	translocase of chloroplast 132 [Arabidopsis thaliana]	4.0e-32	75%
RefSeq	Populus trichocarpa	XP_002312976.1	predicted protein, partial [Populus trichocarpa]	1.0e-29	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SLF3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 652 aas, your sequence is shorter than subject: 140 - 1206

Fln protein: GR*RRAGWGISLTAAAAANAGSDNTSTSSSGLQLPARPAGLGAAAPLLGPPPRAVQQSRANGTSASHSSQLVEDQSTEDDENNETREKLQMIRVRFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGSRNSSRTGAFSFD

Protein Length: 141

Fln nts: AGGAAGATGAAGAAGAGCAGGATGGGGGATTTCCTTGACTGCAGCAGCAGCTGCCAATGCAGGTTCTGACAACACATCTACAAGCAGTTCAGGATTGCAGCTTCCAGCTCGTCCAGCAGGCCTAGGAGCTGCAGCACCATTACTAGGGCCCCCTCCTCGTGCAGTGCAGCAGTCCAGAGCAAATGGTACTTCGGCATCCCATTCATCCCAACTTGTGGAGGATCAGTCTACTGAAGATGATGAGAATAATGAAACCCGTGAGAAGCTTCAGATGATCAGAGTGAGATTTCTGCGACTTGCCCATAGATTAGGTCAGACTCCACACAATGTTGTGGTTGCACAGGTCTTGTACAGGCTTGGTCTGGCAGAGCAGCTGAGGGGAAGCAGAAATTCCAGCAGAACTGGAGCCTTCAGCTTTGAC

Fln Alignment:

AllPine_a_c17345___QQSRANGTSASHSSQLVEDQST-EDDENNETREKLQMIRVRFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGSRNSSRTGAFSFD
Q9SLF3_______________QQSRVNGNGSHNQFQQAEDSTTTEADEHDETREKLQLIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRG-RNGSRVGAFSFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain