SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97157

Length: 256 nt

UniGene Fasta

>sp_v3.0_unigene97157
GACTCTATATGGACTTATAGCGTCTCAGTTCGGCGATAACTCAGAAGAAATGGTGTTGGCCGATGGTACAAAACAACAAGTGAACAAATTCCTGAGGAGCTACTTTGGATATAGGGACGATTTTATGGGACCAGTAGCGGTTGCTATGGTGTCATTCGCAGTATTGTTTGCACTATTCTTTGCCACCAGCATCAAGATTCTCAATTTCCAAAAGAGATAGAATAACATTACATTTTGAATTATATTTTGATTTTGG

Ace file of the UniGene sp_v3.0_unigene97157

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZJK5_PICSI	-	-	1.0e-10	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	ATP-binding cassette transporter, putative	-	-	2.251e-06	-

Source	Gene names
Sma3	B1090H08.39; LOC_Os01g08260; OSJNBa0017I18.21-1; OSJNBa0017I18.21-2; OSJNBb0095I04.27-1; OSJNBb0095I04.27-2; Os01g0177900; Os08g0384500; Os09g0332700; OsI_00628; OsI_29079; OsI_30931; OsJ_00597; OsJ_27150; OsJ_28928; PDR6; RCOM_1053600; RCOM_1053730;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: your sequence is shorter than subject: 73 - 412

Fln protein: TLYGLIASQFGDNSEEMVLADGTKQQVNKFLRSYFGYRDDFMGPVAVAMVSFAVLFALFFATSIKILNFQKR*

Protein Length: 74

Fln nts: GACTCTATATGGACTTATAGCGTCTCAGTTCGGCGATAACTCAGAAGAAATGGTGTTGGCCGATGGTACAAAACAACAAGTGAACAAATTCCTGAGGAGCTACTTTGGATATAGGGACGATTTTATGGGACCAGTAGCGGTTGCTATGGTGTCATTCGCAGTATTGTTTGCACTATTCTTTGCCACCAGCATCAAGATTCTCAATTTCCAAAAGAGATAG___AATAACATTACATTTTGAATTATATTTTGATTTTGG

Fln Alignment:

AllPine_a_c17001___TLYGLIASQFGDNSEEMVLA-DGTKQQVNKFLRSYFGYRDDFMGPXXXXXXXXXXXXXXXXXTSIKILNFQKR
D5ACV1_______________TLYGLITSQLGDLTGFVEVAGEKDTMSVQQFLEGYFGYRHDFLGVVAAVHVGIVILFFSVFAFGIKYLNFQRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain