SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97094

Length: 321 nt

UniGene Fasta

>sp_v3.0_unigene97094
AATGTGCTAATGAAGGATACATATGCCCCAAGCCTTCTGTTACGAAGGGCTTTATGGAGGTTTGCTGCAAAAAGGATCCTAATTTTGTAACTGTTGTCAATGAAACACAATTTCTCCCTCGCCAGGAAGGAGATCTTACCATTAGTTATGATGTCACACAGGCCTTTGAAAGCAACTATTGGGCACAGGTAACAATTTCTAATGAGAATCCTATTGGCCGTTTGGACTACTGGAAATTGTCCTGGGAATGGCAGAGGGGAGAATTTATTCTAGCCATGAAGGGTGCAGAGACACTACAACAAAGTCAGAGTGACTGCATCG

Ace file of the UniGene sp_v3.0_unigene97094

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	COBRA-like protein 11 [Arabidopsis thaliana] sp\|Q9T045.2\|CBL11_ARATH RecName: Full=COBRA-like protein 11; Flags: Precursor dbj\|BAD43466.1\| GPI-anchored protein [Arabidopsis thaliana] dbj\|BAD43826.1\| GPI-anchored protein [Arabidopsis thaliana] gb\|AEE85302.	-	-	2.0e-26	50%
FL-Next	sp=COBRA-like protein 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Sma3	Protein COBRA, putative	-	-	1.093e-11	-

Source	Gene names
Sma3	At3g16860; At3g20580; At4g16120; At4g27110; Bk2L5; COBL10; COBL11; COBL7; COBL8; GSVIVT00006906001; GSVIVT00027383001; GSVIVT00028061001; GSVIVT00033094001; K10D20_11; MUH15.2; Os06g0685100; OsI_24225; OsJ_22409; P0009H10.35; POPTRDRAFT_1099081; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl-phosphatidyl inositol-anchored, plant	IPR006918	-	0.0	-
Sma3	EGF-like region, conserved site	IPR013032	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27110.1	COBL11 COBRA-like protein 11 precursor chr4:13599236-13601521 REVERSE LENGTH=668	1.0e-32	50%
RefSeq	Arabidopsis thaliana	NP_567766.1	COBRA-like protein 11 [Arabidopsis thaliana]	2.0e-32	50%
RefSeq	Populus trichocarpa	XP_002315461.1	predicted protein [Populus trichocarpa]	6.0e-35	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9T045

Fln msg: Distance to subject end: 386 aas, your sequence is shorter than subject: 106 - 668

Fln protein: CANEGYICPKPSVTKGFMEVCCKKDPNFVTVVNETQFLPRQEGDLTISYDVTQAFESNYWAQVTISNENPIGRLDYWKLSWEWQRGEFILAMKGAETLQQSQSDCI

Protein Length: 107

Fln nts: AATGTGCTAATGAAGGATACATATGCCCCAAGCCTTCTGTTACGAAGGGCTTTATGGAGGTTTGCTGCAAAAAGGATCCTAATTTTGTAACTGTTGTCAATGAAACACAATTTCTCCCTCGCCAGGAAGGAGATCTTACCATTAGTTATGATGTCACACAGGCCTTTGAAAGCAACTATTGGGCACAGGTAACAATTTCTAATGAGAATCCTATTGGCCGTTTGGACTACTGGAAATTGTCCTGGGAATGGCAGAGGGGAGAATTTATTCTAGCCATGAAGGGTGCAGAGACACTACAACAAAGTCAGAGTGACTGCATCG

Fln Alignment:

AllPine_a_c16834___NEGYICPKPSVTKGFMEVCCKKDPNFVTVVN-ETQFLPRQEGDLTISYDVTQAFESNYWAQVTISNENPIGRLDYWKLSWEWQRGEFILAMKGAETLQQSQSDCI
Q9T045_______________NDGWQCPAATSKGGTMQVCCKRNPKFKAKEKVKTKFMPRQHGDLNIIYDVLQAYASSYMAQVTIDNTSPLGRLDHWNLTWEWMRGEFIHSMRGAYAAEKNTLECL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain