SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97073

Length: 272 nt

UniGene Fasta

>sp_v3.0_unigene97073
ATGGGGGCACTCGCCACTTCCATCGCCATTGCTGGAACCCTAGAAGAACAGTCGCTTTATTTTCTTTCTTTTTTAACTCAGGAGTTAAATCGCAATACAAAACTCCTGTGCTGGACTGTATTGTATCATAGTCGAGAGAGGCCATGGGGCGGGGAAAGATAGAGCTGAAGAAGATAGAAAGCACAAGCAACAGGCAGGTGACGTTCTCGAAGCGGCGGATGGGGTTGCTTAAAAAGGCACAGGAGCTTTCCGTCTTATGCGATGCAGAGGTC

Ace file of the UniGene sp_v3.0_unigene97073

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADS-domain protein DAL10 n=1 Tax=Picea abies RepID=Q71UQ7_PICAB	-	-	2.0e-15	100%
FL-Next	tr=MADS-domain protein DAL10; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	100%
Sma3	MADS-box transcription factor	-	-	5.068e-26	-

Source	Gene names
Sma3	AG; AG-1; AG-2; AG1; AG1-T2; AG2; AGAMOUS; AGL; AGL1; AGL10; AGL11; AGL15; AGL26; AGL39; AGL5; AOM2; AP3; AP3-2b; AP3-3; AP3A; AVAG1; AVAG2; AlsDEFb; ApMADS2; At1g26310; At2g42830; At3g58780; At4g09960; At5g13790; B1065E10.30; BnSHP1; BsAP3; BsPI; CAG1; C

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42830.2	SHP2, AGL5 K-box region and MADS-box transcription factor family protein chr2:17820602-17823806 FORWARD LENGTH=248	3.0e-17	74%
RefSeq	Arabidopsis thaliana	NP_001078311.1	agamous-like MADS-box protein AGL1 [Arabidopsis thaliana]	4.0e-17	76%
RefSeq	Populus trichocarpa	XP_002314062.1	predicted protein [Populus trichocarpa]	7.0e-18	83%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q71UQ7

Fln msg: Distance to subject end: 227 aas, your sequence is shorter than subject: 43 - 270

Fln protein: MGRGKIELKKIESTSNRQVTFSKRRMGLLKKAQELSVLCDAEV

Protein Length: 44

Fln nts: ATGGGGGCACTCGCCACTTCCATCGCCATTGCTGGAACCCTAGAAGAACAGTCGCTTTATTTTCTTTCTTTTTTAACTCAGGAGTTAAATCGCAATACAAAACTCCTGTGCTGGACTGTATTGTATCATAGTCGAGAGAGGCC_-_ATGGGGCGGGGAAAGATAGAGCTGAAGAAGATAGAAAGCACAAGCAACAGGCAGGTGACGTTCTCGAAGCGGCGGATGGGGTTGCTTAAAAAGGCACAGGAGCTTTCCGTCTTATGCGATGCAGAGGTC

Fln Alignment:

AllPine_a_c16789___MGRGKIELKKIESTSNRQVTFSKRRMGLLKKAQELSVLCDAEV
Q71UQ7_______________MGRGKIELKKIESTSNRQVTFSKRRMGLLKKAQELSVLCDAEV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
205		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain