SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene97054

Length: 640 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene97054 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Progesterone 5-beta-reductase	-	-	6.372e-07	-

Source	Gene names
Sma3	AT4g24220; At4g24220; At4g24220/T22A6.50; GSVIVT00014929001; GSVIVT00033107001; MtrDRAFT_AC158501g29v2; MtrDRAFT_AC158501g31v2; MtrDRAFT_AC158501g32v2; Nt-5beta-POR-A; Nt-5beta-POR-B; PHYPADRAFT_104684; POPTRDRAFT_551803; POPTRDRAFT_592041; POPTRDRAFT_644

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24220.1	VEP1, AWI31 NAD(P)-binding Rossmann-fold superfamily protein chr4:12565219-12566474 FORWARD LENGTH=388	47%
RefSeq	Arabidopsis thaliana	NP_001078438.1	WcaG domain-containing protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002304533.1	predicted protein [Populus trichocarpa]	45%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
316		33		66	0.997452
354	80		20		0.995493
505			33	66	0.997453
531		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain